Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.1e-217 759.6 363 100.0
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.1e-96 356.7 360 52.5
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 5.4e-92 342.0 227 70.5
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.8e-90 337.0 447 41.8
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.0e-82 311.2 233 63.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 6.7e-82 308.5 203 69.5
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-80 304.3 224 61.6
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.3e-80 304.3 224 61.6
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.8e-80 302.4 215 62.8
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.8e-80 302.4 215 62.8
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 1.7e-77 293.9 228 61.0
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 5.5e-68 262.3 199 62.8
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 9.4e-68 261.5 198 61.6
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.6e-67 260.8 221 58.8
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 6.1e-67 258.8 216 60.2
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 2.3e-66 256.9 198 61.6
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.0e-66 256.5 199 60.3
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 3.0e-66 256.5 224 55.8
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 5.1e-66 255.8 198 61.6
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 5.1e-66 255.8 210 58.1
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 6.7e-66 255.4 213 57.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 8.8e-66 255.0 198 61.6
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 1.1e-65 254.6 216 57.9
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.1e-65 254.6 198 61.1
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.5e-65 254.2 201 60.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 1.5e-65 254.2 194 61.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.5e-65 253.4 216 56.9
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.3e-65 252.7 218 58.3
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 4.3e-65 252.7 220 56.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 7.4e-65 251.9 214 56.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 7.4e-65 251.9 216 57.4
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 9.7e-65 251.5 199 58.3
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.3e-64 251.1 218 56.4
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.3e-64 251.1 217 54.8
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.7e-64 250.8 216 58.3
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.7e-64 250.8 214 55.1
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 2.2e-64 250.4 200 59.5
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 2.8e-64 250.0 217 56.2
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 3.7e-64 249.6 226 54.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 6.3e-64 248.8 200 59.0
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 6.3e-64 248.8 194 59.3
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 8.2e-64 248.4 200 58.5
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 1.1e-63 248.1 200 59.5
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-63 247.7 200 58.5
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.4e-63 247.7 215 58.1
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.8e-63 247.3 212 55.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.8e-63 247.3 202 59.4
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.8e-63 247.3 221 54.3
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.4e-63 246.9 220 55.9
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.1e-63 246.5 212 55.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 6.9e-63 245.4 217 54.4
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 9.1e-63 245.0 204 55.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 9.1e-63 245.0 202 58.4
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 9.1e-63 245.0 228 54.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 1.5e-62 244.2 215 55.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.0e-62 243.8 194 56.7
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 2.6e-62 243.4 223 53.4
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.6e-62 243.4 219 54.3
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 3.4e-62 243.0 212 54.7
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.4e-62 243.0 197 57.9
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 3.4e-62 243.0 197 57.4
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 3.4e-62 243.0 200 58.0
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 4.5e-62 242.7 219 52.1
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 5.9e-62 242.3 296 44.3
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 7.7e-62 241.9 222 55.9
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.3e-61 241.1 194 57.2
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.7e-61 240.7 200 57.0
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 1.7e-61 240.7 219 53.0
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.7e-61 240.7 224 54.5
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 2.9e-61 240.0 202 55.4
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 2.9e-61 240.0 195 59.5
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.9e-61 240.0 216 54.2
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.8e-61 239.6 212 53.8
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.8e-61 239.6 220 53.6
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 3.8e-61 239.6 206 55.3
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.0e-61 239.2 214 55.6
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 8.5e-61 238.4 216 55.1
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 8.5e-61 238.4 219 52.1
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 8.5e-61 238.4 193 58.5
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.1e-60 238.0 220 52.3
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 1.1e-60 238.0 213 55.4
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.4e-60 237.7 226 51.8
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.9e-60 237.3 219 53.0
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.9e-60 237.3 178 61.2
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.5e-60 236.9 194 56.2
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.2e-60 236.5 192 57.8
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.2e-60 236.5 198 56.6
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.5e-60 235.7 222 50.9
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.4e-60 235.0 218 53.2
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 9.4e-60 235.0 198 56.1
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.6e-59 234.2 218 54.1
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 2.1e-59 233.8 216 52.8
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.7e-59 233.4 219 51.1
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 4.7e-59 232.6 226 54.0
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 4.7e-59 232.6 242 50.0
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.0e-58 231.5 222 50.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 1.4e-58 231.1 206 52.9
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.4e-58 231.1 203 53.2
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.8e-58 230.7 210 54.3
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 2.3e-58 230.3 206 52.9
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.3e-58 230.3 212 52.4
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.0e-58 229.9 216 52.3
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.0e-58 229.9 216 52.3
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 3.9e-58 229.6 212 52.8
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 5.1e-58 229.2 197 55.3
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 8.8e-58 228.4 234 48.7
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.5e-57 227.6 228 50.4
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.0e-57 227.3 216 51.4
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.4e-57 226.1 201 53.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 7.4e-57 225.3 203 53.7
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-56 224.6 200 55.5
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.7e-56 224.2 201 54.2
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 3.7e-56 223.0 208 53.4
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 8.2e-56 221.9 196 54.1
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-55 221.5 234 48.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-55 220.7 200 53.0
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 2.4e-55 220.3 200 53.0
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 2.4e-55 220.3 235 48.1
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.1e-55 219.9 201 52.7
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 7.0e-55 218.8 196 53.6
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.2e-54 218.0 200 52.0
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 7.7e-54 215.3 209 49.8
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 7.7e-54 215.3 222 47.7
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.0e-53 214.9 197 51.8
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.5e-52 210.3 223 46.2
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 5.5e-52 209.1 221 49.3
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.2e-51 208.0 215 47.9
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.1e-51 207.2 223 45.3
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 2.7e-51 206.8 198 49.0
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.6e-51 206.5 198 49.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.7e-51 206.1 213 48.8
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.0e-51 205.3 210 48.1
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 8.8e-50 201.8 192 49.5
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.3e-49 199.9 196 48.0
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 7.4e-49 198.7 193 46.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 3.7e-48 196.4 133 67.7
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.8e-48 196.1 197 47.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 3.5e-46 189.9 102 90.2
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 7.7e-46 188.7 180 50.6
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.2e-43 181.4 173 52.0
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.1e-43 179.1 227 45.4
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.0e-43 178.7 135 59.3
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.0e-42 178.3 180 52.8
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 5.2e-42 176.0 194 43.3
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 6.7e-42 175.6 133 60.2
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.7e-41 172.6 156 54.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 5.7e-41 172.6 135 60.0
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 9.7e-41 171.8 203 42.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 1.9e-36 157.5 192 39.1
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.7e-35 153.7 217 41.5
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 7.5e-33 145.6 102 65.7
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 4.8e-32 142.9 99 63.6
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 3.1e-31 140.2 133 52.6
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.4e-31 139.4 120 54.2
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.7e-29 134.4 95 64.2
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 5.0e-29 132.9 111 54.1
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 8.6e-29 132.1 117 52.1
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.2e-27 128.3 113 49.6
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.2e-26 122.9 92 63.0
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 6.8e-26 122.5 136 45.6
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 8.9e-26 122.1 180 42.2
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-25 121.7 110 51.8
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 4.4e-25 119.8 110 50.9
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 1.8e-23 114.4 131 45.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 4.1e-23 113.2 195 33.3
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 5.4e-23 112.8 101 52.5
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 1.2e-22 111.7 75 62.7
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 4.5e-22 109.8 176 34.1
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 4.3e-20 103.2 87 54.0
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 4.3e-20 103.2 88 46.6
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.1e-19 100.9 94 51.1
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 2.8e-19 100.5 85 52.9
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-16 90.5 77 51.9
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 2.4e-15 87.4 122 43.4
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.0e-13 82.0 61 59.0
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.0e-13 80.5 93 45.2
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.2e-09 68.6 79 45.6


User provided reference genes

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