Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 5.9e-71 270.8 139 100.0
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.9e-69 265.8 139 97.8
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 4.4e-58 228.0 138 82.6
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 3.1e-56 221.9 137 83.2
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 4.1e-56 221.5 138 83.3
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 4.3e-53 211.5 140 75.7
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 7.2e-53 210.7 133 79.7
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 7.2e-53 210.7 139 77.0
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 7.2e-53 210.7 136 78.7
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 3.6e-52 208.4 134 79.1
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 6.1e-52 207.6 139 79.1
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 8.0e-52 207.2 139 76.3
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.0e-51 206.8 139 74.8
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.4e-51 206.5 131 79.4
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 4.0e-51 204.9 131 79.4
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 4.0e-51 204.9 131 79.4
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 6.8e-51 204.1 139 76.3
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 8.9e-51 203.8 138 74.6
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 8.9e-51 203.8 136 77.9
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 8.9e-51 203.8 130 75.4
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-50 203.4 138 74.6
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.5e-50 203.0 139 75.5
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 2.0e-50 202.6 140 74.3
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 3.4e-50 201.8 136 74.3
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 4.4e-50 201.4 138 73.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 5.7e-50 201.1 138 73.9
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 7.5e-50 200.7 134 74.6
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 9.8e-50 200.3 136 73.5
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 9.8e-50 200.3 139 74.8
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 9.8e-50 200.3 138 73.2
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 1.3e-49 199.9 138 72.5
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 3.7e-49 198.4 133 75.9
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 4.9e-49 198.0 132 75.8
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 6.4e-49 197.6 138 73.2
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 8.3e-49 197.2 139 71.9
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 1.1e-48 196.8 138 73.2
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.8e-48 196.1 138 71.0
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 2.4e-48 195.7 139 70.5
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.4e-48 195.7 134 74.6
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 4.1e-48 194.9 134 71.6
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 7.0e-48 194.1 130 75.4
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 7.0e-48 194.1 139 71.9
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-47 193.4 144 70.1
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-47 193.4 132 74.2
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 2.7e-47 192.2 139 70.5
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 2.7e-47 192.2 138 71.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 3.5e-47 191.8 138 72.5
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 4.6e-47 191.4 130 75.4
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 7.8e-47 190.7 163 62.0
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.0e-46 190.3 134 73.9
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 1.0e-46 190.3 138 71.0
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.0e-46 190.3 138 71.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.3e-46 189.9 150 68.0
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 3.9e-46 188.3 135 71.9
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.0e-46 188.0 141 70.2
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 5.0e-46 188.0 135 74.8
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.1e-45 186.8 135 74.1
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 1.1e-45 186.8 135 74.1
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.9e-45 186.0 157 66.9
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 4.3e-45 184.9 136 72.8
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 5.6e-45 184.5 126 75.4
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.6e-44 183.0 136 72.1
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 2.1e-44 182.6 139 69.1
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 2.8e-44 182.2 164 59.1
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 3.6e-44 181.8 136 68.4
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 3.6e-44 181.8 136 67.6
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.7e-44 181.4 139 66.9
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 6.2e-44 181.0 130 74.6
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 8.0e-44 180.6 150 66.0
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.0e-43 180.3 139 68.3
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 1.4e-43 179.9 139 67.6
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.3e-43 179.1 142 67.6
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.3e-43 179.1 142 67.6
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.3e-43 179.1 142 67.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 2.3e-43 179.1 136 67.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.3e-43 179.1 142 68.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.1e-43 178.7 142 67.6
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.0e-43 178.3 138 68.1
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 4.0e-43 178.3 131 72.5
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.0e-43 178.3 130 73.1
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 6.8e-43 177.6 131 69.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 6.8e-43 177.6 134 68.7
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 6.8e-43 177.6 131 69.5
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 6.8e-43 177.6 130 70.0
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 6.8e-43 177.6 134 68.7
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 6.8e-43 177.6 131 69.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 8.9e-43 177.2 149 65.8
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 8.9e-43 177.2 131 71.8
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 8.9e-43 177.2 140 67.1
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 1.2e-42 176.8 131 69.5
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 1.2e-42 176.8 131 69.5
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 2.6e-42 175.6 139 66.9
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.4e-42 175.3 139 66.9
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 3.4e-42 175.3 135 66.7
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 4.4e-42 174.9 133 67.7
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 4.4e-42 174.9 130 69.2
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 4.4e-42 174.9 133 66.9
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 5.8e-42 174.5 146 65.1
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.3e-41 173.3 131 69.5
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.2e-41 172.6 152 61.8
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.9e-41 172.2 146 65.8
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 2.4e-40 169.1 127 69.3
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 9.2e-40 167.2 130 66.9
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 9.2e-40 167.2 127 68.5
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 1.2e-39 166.8 116 75.9
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.3e-38 162.5 133 65.4
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.1e-37 160.2 131 67.2
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.1e-37 160.2 141 61.0
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.1e-35 153.7 131 65.6
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 7.5e-34 147.5 128 62.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.1e-32 143.7 98 79.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.4e-32 143.3 144 57.6
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 7.8e-31 137.5 96 77.1
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 5.1e-30 134.8 95 74.7
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 8.4e-25 117.5 98 65.3
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.3e-22 110.2 70 77.1
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 3.0e-22 109.0 145 47.6
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.5e-21 105.9 76 69.7
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 9.6e-21 104.0 161 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.6e-20 103.2 99 56.6
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 8.1e-20 100.9 65 76.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.4e-19 100.1 137 48.2
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 3.1e-19 99.0 62 79.0
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.4e-18 95.5 63 73.0
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 5.8e-18 94.7 61 73.8
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 2.9e-17 92.4 71 67.6
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 4.9e-17 91.7 133 43.6
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 7.8e-15 84.3 73 57.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.3e-14 83.6 109 49.5
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 4.3e-13 78.6 84 50.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.2e-10 70.5 95 49.5
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 8.4e-09 64.3 112 42.0
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.4e-09 64.3 137 41.6
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 4.6e-07 58.5 123 33.3
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.3e-06 57.0 88 37.5
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 3.9e-06 55.5 57 49.1


User provided reference genes

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