Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 6.7e-125 450.7 225 100.0
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.4e-122 442.2 225 98.2
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 1.6e-105 386.3 227 86.3
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 8.0e-102 374.0 223 83.9
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 3.9e-80 302.0 228 69.3
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.1e-79 300.4 221 69.7
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 2.8e-78 295.8 221 66.1
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 3.6e-78 295.4 221 67.9
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.6e-78 295.4 187 75.4
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 6.2e-78 294.7 216 71.3
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 8.1e-78 294.3 223 67.3
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 1.4e-77 293.5 223 66.8
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.4e-77 293.5 221 67.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.8e-77 293.1 192 80.2
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.8e-77 293.1 225 68.9
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.8e-77 293.1 184 77.2
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 3.1e-77 292.4 209 69.9
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 4.0e-77 292.0 204 73.0
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 8.9e-77 290.8 181 77.3
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 8.9e-77 290.8 194 73.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 8.9e-77 290.8 206 69.4
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 8.9e-77 290.8 180 77.2
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.2e-76 290.4 204 72.1
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.2e-76 290.4 204 73.5
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 1.5e-76 290.0 225 68.4
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.5e-76 290.0 194 74.2
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 3.4e-76 288.9 225 68.0
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 3.4e-76 288.9 209 67.5
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.7e-75 286.6 196 74.0
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 2.2e-75 286.2 205 69.3
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 3.7e-75 285.4 222 66.7
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 4.9e-75 285.0 223 65.5
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.4e-75 284.6 201 71.6
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 8.4e-75 284.3 205 69.8
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 8.4e-75 284.3 181 76.2
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.9e-74 283.1 206 68.4
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.9e-74 283.1 188 72.3
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 3.2e-74 282.3 226 62.4
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 3.2e-74 282.3 205 68.3
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 3.2e-74 282.3 205 69.8
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 3.2e-74 282.3 208 68.3
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 3.2e-74 282.3 192 72.4
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 4.1e-74 282.0 193 72.5
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.4e-74 281.6 228 64.5
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 5.4e-74 281.6 208 68.8
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 7.1e-74 281.2 205 68.3
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 9.2e-74 280.8 184 73.9
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.6e-73 280.0 199 71.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.6e-73 280.0 184 75.5
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.6e-73 280.0 184 75.5
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-73 278.9 223 66.4
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 3.5e-73 278.9 223 66.4
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 4.6e-73 278.5 206 67.0
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 7.8e-73 277.7 213 66.2
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 2.3e-72 276.2 203 68.5
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 3.9e-72 275.4 222 65.8
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 5.1e-72 275.0 224 64.7
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 8.6e-72 274.2 205 68.3
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 8.6e-72 274.2 181 70.7
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.5e-71 273.5 184 70.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 1.9e-71 273.1 181 74.6
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 5.6e-71 271.6 183 68.3
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 7.3e-71 271.2 206 70.4
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.2e-70 270.4 208 65.4
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.6e-70 270.0 184 69.0
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 4.7e-70 268.5 179 71.5
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.4e-69 266.9 207 65.2
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.8e-69 266.5 184 69.6
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 2.4e-69 266.2 206 64.6
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 4.0e-69 265.4 186 68.3
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 4.0e-69 265.4 186 68.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 8.9e-69 264.2 193 67.4
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 2.6e-68 262.7 184 67.9
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 3.4e-68 262.3 184 66.8
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 4.4e-68 261.9 186 67.7
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 4.4e-68 261.9 186 67.7
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 9.9e-68 260.8 214 64.5
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 1.3e-67 260.4 233 59.7
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.0e-64 250.8 164 75.0
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 3.3e-63 245.7 141 80.9
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 5.6e-63 245.0 232 56.5
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 1.6e-62 243.4 144 77.8
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 3.1e-61 239.2 141 78.0
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.0e-60 236.5 173 64.7
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 2.0e-60 236.5 173 67.6
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 2.9e-59 232.6 195 62.1
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 3.2e-58 229.2 216 56.0
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 9.3e-58 227.6 173 61.8
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.7e-57 226.1 164 64.6
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.6e-57 225.3 173 61.3
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 7.9e-57 224.6 189 66.1
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.5e-55 220.3 188 64.4
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.9e-55 219.9 160 67.5
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 9.6e-55 217.6 187 62.0
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 4.8e-54 215.3 190 64.2
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 2.5e-47 193.0 173 60.1
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 3.4e-44 182.6 166 59.0
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 2.5e-39 166.4 183 48.6
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 5.7e-39 165.2 129 64.3
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 1.4e-34 150.6 123 60.2
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.2e-33 147.5 190 44.7
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 3.5e-33 146.0 120 59.2
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.8e-32 143.7 199 42.2
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 7.4e-31 138.3 236 36.9
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 4.8e-30 135.6 84 71.4
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 4.8e-30 135.6 84 71.4
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.7e-27 127.1 170 40.6
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 5.1e-24 115.5 81 67.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 5.7e-23 112.1 92 62.0
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 7.4e-23 111.7 55 87.3
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 2.8e-22 109.8 176 37.5
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 4.2e-18 95.9 82 59.8
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.3e-16 90.1 77 58.4
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.2e-12 77.8 63 58.7
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 7.7e-12 75.1 62 53.2
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.9e-10 70.5 64 51.6
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 4.2e-10 69.3 217 26.3
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 7.2e-10 68.6 34 88.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 6.1e-09 65.5 142 27.5
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 1.0e-08 64.7 142 31.0
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 3.0e-08 63.2 149 25.5
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 5.2e-08 62.4 142 30.3
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 6.7e-08 62.0 95 44.2
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.1e-07 61.2 33 81.8
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 2.0e-07 60.5 144 27.1
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 3.3e-07 59.7 211 27.5
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 3.3e-07 59.7 140 30.7
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 4.4e-07 59.3 183 27.3
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 5.7e-07 58.9 171 26.9
Haze_25191 Corylus avellana HOM05D005663 ORTHO05D007258 7.5e-07 58.5 142 28.2
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 9.7e-07 58.2 171 25.7
Actinidia06667 Actinidia chinensis HOM05D005663 ORTHO05D007258 1.3e-06 57.8 140 26.4
Lsat_1_v5_gn_4_138241 Lactuca sativa HOM05D005663 ORTHO05D007258 1.3e-06 57.8 143 27.3
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 1.3e-06 57.8 141 27.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 1.3e-06 57.8 148 25.7
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 2.8e-06 56.6 189 24.9
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 2.8e-06 56.6 140 25.7
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 3.7e-06 56.2 171 26.9
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 4.8e-06 55.8 142 27.5
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 4.8e-06 55.8 140 25.7
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 6.3e-06 55.5 192 23.4
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 6.3e-06 55.5 140 26.4
QL06p051868 Quercus lobata HOM05D005663 ORTHO05D007258 8.2e-06 55.1 141 23.4


User provided reference genes

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