Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.1e-98 363.6 222 100.0
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.7e-91 339.7 195 97.4
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 9.2e-58 227.6 237 59.1
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 9.2e-42 174.5 242 52.9
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.6e-33 147.1 244 43.4
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 2.3e-32 143.3 244 50.8
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 6.2e-30 135.2 231 41.6
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.3e-29 133.3 239 38.5
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 3.4e-28 129.4 236 41.1
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 5.8e-28 128.6 234 38.5
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 9.9e-28 127.9 239 40.6
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 2.2e-27 126.7 234 43.2
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 4.9e-27 125.6 210 49.0
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 4.9e-27 125.6 235 40.0
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 6.4e-27 125.2 222 42.3
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 8.4e-27 124.8 232 36.6
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 1.1e-26 124.4 242 40.1
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 2.4e-26 123.2 236 39.4
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 4.1e-26 122.5 237 36.7
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 7.1e-26 121.7 233 39.5
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 2.7e-25 119.8 233 39.9
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 4.6e-25 119.0 235 39.1
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 6.0e-25 118.6 235 39.1
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 7.8e-25 118.2 240 38.8
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 1.0e-24 117.9 233 36.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.3e-24 117.5 238 39.5
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.3e-24 116.7 237 40.5
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.0e-24 116.3 232 38.8
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 3.0e-24 116.3 237 38.0
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 5.1e-24 115.5 233 39.1
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 6.6e-24 115.2 232 37.9
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 1.9e-23 113.6 245 37.6
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 9.6e-23 111.3 241 40.2
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 9.6e-23 111.3 238 37.4
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 1.2e-22 110.9 238 39.9
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 1.6e-22 110.5 232 38.8
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 4.7e-22 109.0 239 36.0
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 6.2e-22 108.6 233 36.9
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 6.2e-22 108.6 236 36.9
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 6.2e-22 108.6 235 41.7
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 8.1e-22 108.2 240 37.5
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 2.4e-21 106.7 241 34.9
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 2.4e-21 106.7 232 39.2
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 2.4e-21 106.7 241 45.2
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 3.1e-21 106.3 239 38.9
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 4.0e-21 105.9 233 36.1
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 5.2e-21 105.5 236 37.3
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 5.2e-21 105.5 236 38.6
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 6.9e-21 105.1 231 36.8
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 6.9e-21 105.1 239 37.7
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 1.5e-20 104.0 285 33.7
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 2.0e-20 103.6 230 37.0
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 2.0e-20 103.6 233 39.9
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 2.0e-20 103.6 236 43.6
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 2.6e-20 103.2 231 36.4
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 4.4e-20 102.4 238 35.7
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 5.8e-20 102.1 239 39.3
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 9.9e-20 101.3 231 38.1
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.3e-19 100.9 233 39.9
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-19 100.9 233 39.9
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.3e-19 100.9 233 39.9
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.2e-19 100.1 235 40.9
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 2.9e-19 99.8 230 36.1
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 2.9e-19 99.8 237 38.0
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 1.1e-18 97.8 236 36.4
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.4e-18 97.4 233 39.9
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 5.4e-18 95.5 110 50.0
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 9.3e-18 94.7 212 35.8
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 9.3e-18 94.7 244 38.5
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 9.3e-18 94.7 236 36.9
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 1.2e-17 94.4 231 38.1
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 1.6e-17 94.0 234 34.2
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.6e-17 94.0 235 37.0
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 2.1e-17 93.6 230 36.5
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 2.1e-17 93.6 231 32.5
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 3.5e-17 92.8 234 41.5
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.6e-17 92.4 235 36.6
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 6.0e-17 92.0 245 32.7
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 7.8e-17 91.7 250 36.8
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 1.0e-16 91.3 238 32.4
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 3.0e-16 89.7 232 33.2
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 3.9e-16 89.4 228 36.0
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 5.1e-16 89.0 233 38.2
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 5.1e-16 89.0 166 41.6
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 8.7e-16 88.2 218 34.4
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.1e-15 87.8 231 33.3
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.1e-15 87.8 71 63.4
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 1.5e-15 87.4 227 35.2
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 4.3e-15 85.9 179 35.2
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.3e-15 85.9 87 56.3
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 7.3e-15 85.1 233 34.3
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 7.3e-15 85.1 241 34.4
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 7.3e-15 85.1 177 38.4
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 1.3e-14 84.3 201 36.8
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 1.8e-13 80.5 148 37.8
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 3.1e-13 79.7 223 34.1
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 5.3e-13 79.0 69 55.1
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 5.3e-13 79.0 76 50.0
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 5.3e-13 79.0 227 31.7
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 6.9e-13 78.6 88 47.7
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 9.0e-13 78.2 183 31.7
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 2.6e-12 76.6 138 39.1
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.5e-12 75.9 154 40.3
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 5.8e-12 75.5 164 36.0
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 9.9e-12 74.7 137 36.5
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 1.3e-11 74.3 223 33.2
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.3e-11 74.3 206 33.5
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 8.4e-11 71.6 80 48.8
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 4.6e-09 65.9 241 29.5
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 6.0e-09 65.5 200 31.5
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 1.0e-08 64.7 120 35.0
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 1.3e-08 64.3 244 26.2
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 3.0e-08 63.2 213 28.2


User provided reference genes

Program Settings