Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.5e-147 526.2 265 100.0
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 2.7e-101 372.5 244 81.1
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 1.3e-82 310.5 292 61.6
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 6.6e-71 271.6 186 73.1
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 6.6e-71 271.6 262 59.2
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 1.9e-70 270.0 266 57.9
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 1.6e-69 266.9 266 59.8
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 2.1e-69 266.5 263 57.4
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 2.8e-69 266.2 262 58.8
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 6.2e-69 265.0 222 63.5
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 3.1e-68 262.7 264 56.8
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 5.2e-68 261.9 211 65.9
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 5.2e-68 261.9 207 64.7
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 6.8e-68 261.5 259 59.8
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 6.8e-68 261.5 210 64.8
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 8.9e-68 261.2 221 63.3
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 1.2e-67 260.8 259 58.7
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.2e-67 260.8 258 58.5
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 2.0e-67 260.0 234 60.3
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 2.0e-67 260.0 256 57.0
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 2.0e-67 260.0 247 57.9
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 2.6e-67 259.6 262 56.9
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 2.6e-67 259.6 260 57.3
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 2.6e-67 259.6 209 63.6
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 3.4e-67 259.2 249 57.8
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 3.4e-67 259.2 260 57.3
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 4.4e-67 258.8 238 60.1
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 4.4e-67 258.8 223 62.8
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 5.8e-67 258.5 204 65.7
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 7.5e-67 258.1 247 58.3
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 7.5e-67 258.1 218 62.8
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 7.5e-67 258.1 246 57.7
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 9.9e-67 257.7 203 66.5
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 9.9e-67 257.7 259 56.8
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 1.3e-66 257.3 206 64.1
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 1.3e-66 257.3 248 56.9
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.7e-66 256.9 234 59.8
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 1.7e-66 256.9 211 62.6
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 1.7e-66 256.9 236 58.9
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 2.2e-66 256.5 259 56.8
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 2.2e-66 256.5 254 55.9
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 3.7e-66 255.8 206 65.0
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 3.7e-66 255.8 228 61.8
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 4.9e-66 255.4 212 61.3
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 6.4e-66 255.0 207 63.8
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 8.3e-66 254.6 211 62.1
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 1.1e-65 254.2 207 63.3
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 1.1e-65 254.2 212 62.7
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 1.1e-65 254.2 207 63.8
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 1.1e-65 254.2 258 55.0
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 1.4e-65 253.8 254 55.9
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 1.9e-65 253.4 230 58.7
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 1.9e-65 253.4 204 64.7
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 2.4e-65 253.1 253 57.3
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 4.1e-65 252.3 254 56.7
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 4.1e-65 252.3 240 57.1
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 7.1e-65 251.5 215 61.9
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 7.1e-65 251.5 207 62.8
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 7.1e-65 251.5 261 57.1
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 7.1e-65 251.5 270 56.7
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 7.1e-65 251.5 254 55.5
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 9.2e-65 251.1 248 55.6
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 9.2e-65 251.1 261 54.0
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 9.2e-65 251.1 258 56.6
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 1.2e-64 250.8 207 62.3
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 1.6e-64 250.4 270 56.7
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 1.6e-64 250.4 211 62.6
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 2.1e-64 250.0 260 53.8
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 2.7e-64 249.6 254 56.3
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 3.5e-64 249.2 206 62.6
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 3.5e-64 249.2 233 57.5
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 4.6e-64 248.8 207 62.3
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 6.0e-64 248.4 250 55.2
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 5.1e-63 245.4 284 51.1
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 2.5e-62 243.0 216 58.8
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 5.6e-62 241.9 243 55.1
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 2.8e-61 239.6 238 55.5
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 3.6e-61 239.2 261 54.0
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 4.7e-61 238.8 260 52.3
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 4.4e-59 232.3 258 53.9
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 9.9e-59 231.1 215 58.6
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 9.9e-59 231.1 208 59.1
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 3.8e-58 229.2 205 58.0
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.7e-55 220.3 206 55.8
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 9.6e-54 214.5 189 59.8
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 7.6e-51 204.9 208 54.8
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 1.3e-50 204.1 164 61.0
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 2.2e-50 203.4 231 48.5
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 2.2e-50 203.4 158 65.2
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 3.8e-50 202.6 164 61.6
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 8.4e-50 201.4 223 49.3
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 2.4e-49 199.9 200 56.0
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 5.4e-49 198.7 207 52.2
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 5.4e-49 198.7 164 58.5
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 5.4e-49 198.7 159 64.2
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 7.1e-49 198.4 188 58.0
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 3.0e-47 193.0 198 54.0
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 1.2e-43 181.0 204 52.5
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 3.7e-37 159.5 219 47.0
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 4.8e-37 159.1 218 46.8
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.8e-36 157.1 146 54.8
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 3.1e-36 156.4 224 46.4
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.2e-32 144.4 161 46.6
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 3.7e-29 132.9 157 46.5
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 8.2e-29 131.7 114 58.8
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 8.2e-29 131.7 143 51.0
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 2.5e-25 120.2 71 78.9
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 2.7e-24 116.7 72 77.8
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 4.5e-11 72.8 116 38.8
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 7.7e-11 72.0 169 35.5


User provided reference genes

Program Settings