Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 5.1e-70 268.1 185 100.0
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 7.0e-27 124.8 185 56.2
AUR62038551 Chenopodium quinoa HOM05D007581 ORTHO05D009250 2.1e-23 113.2 185 48.1
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 7.0e-19 98.2 169 58.6
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 4.5e-18 95.5 159 50.9
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 3.8e-17 92.4 164 48.2
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 1.9e-16 90.1 163 49.1
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 2.5e-16 89.7 167 56.3
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 2.5e-16 89.7 167 56.3
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 3.2e-16 89.4 164 55.5
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 3.2e-16 89.4 162 58.6
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 3.2e-16 89.4 163 47.9
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 7.2e-16 88.2 160 55.0
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 9.4e-16 87.8 162 51.9
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 2.7e-15 86.3 162 54.3
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 2.7e-15 86.3 164 51.8
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 3.6e-15 85.9 162 48.8
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 4.7e-15 85.5 165 60.6
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 6.1e-15 85.1 169 52.7
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 6.1e-15 85.1 162 59.3
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 1.0e-14 84.3 179 54.2
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 1.8e-14 83.6 170 54.1
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 3.0e-14 82.8 160 50.6
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 3.0e-14 82.8 160 50.6
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 3.0e-14 82.8 168 43.5
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 4.0e-14 82.4 160 58.1
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 5.2e-14 82.0 165 56.4
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 5.2e-14 82.0 162 43.8
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 5.2e-14 82.0 162 50.0
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 8.8e-14 81.3 169 50.9
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 8.8e-14 81.3 169 50.9
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 8.8e-14 81.3 162 49.4
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 1.2e-13 80.9 173 54.3
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 1.5e-13 80.5 165 59.4
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 1.5e-13 80.5 171 46.2
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 2.0e-13 80.1 170 45.9
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 2.6e-13 79.7 167 49.7
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 2.6e-13 79.7 168 50.6
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 3.4e-13 79.3 186 47.8
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 3.4e-13 79.3 162 49.4
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 5.7e-13 78.6 169 49.7
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 5.7e-13 78.6 165 45.5
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 5.7e-13 78.6 159 58.5
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 5.7e-13 78.6 161 56.5
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 1.7e-12 77.0 160 49.4
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 2.2e-12 76.6 161 50.3
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 2.2e-12 76.6 159 53.5
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 2.2e-12 76.6 160 55.0
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 2.2e-12 76.6 167 52.1
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 2.8e-12 76.3 166 46.4
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 3.7e-12 75.9 164 44.5
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 3.7e-12 75.9 161 52.8
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 4.8e-12 75.5 173 48.0
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 6.3e-12 75.1 163 50.3
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 6.3e-12 75.1 173 48.0
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 6.3e-12 75.1 169 53.3
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 8.3e-12 74.7 159 50.9
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 8.3e-12 74.7 170 38.2
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 8.3e-12 74.7 165 51.5
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 8.3e-12 74.7 165 46.7
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.1e-11 74.3 161 53.4
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.1e-11 74.3 161 53.4
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 1.1e-11 74.3 162 50.0
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 1.4e-11 73.9 161 53.4
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 1.4e-11 73.9 161 53.4
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 1.4e-11 73.9 169 55.0
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.8e-11 73.6 159 54.1
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 2.4e-11 73.2 158 49.4
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 3.1e-11 72.8 165 44.8
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 5.4e-11 72.0 162 44.4
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 7.0e-11 71.6 161 48.4
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 7.0e-11 71.6 161 46.6
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 7.0e-11 71.6 160 46.9
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 2.0e-10 70.1 165 44.8
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 2.7e-10 69.7 165 48.5
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 7.7e-10 68.2 172 45.3
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 7.7e-10 68.2 161 54.7
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 1.7e-09 67.0 165 45.5
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 2.9e-09 66.2 160 56.9
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 8.6e-09 64.7 157 56.7
PGR102G1605 Punica granatum HOM05D007581 ORTHO05D009250 9.5e-08 61.2 107 71.0
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 9.5e-08 61.2 168 52.4
PSO761G0508 Papaver somniferum HOM05D007581 ORTHO05D009250 8.0e-07 58.2 110 62.7
COL.COLO4_25109 Corchorus olitorius HOM05D007581 ORTHO05D009250 1.0e-06 57.8 97 60.8
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 1.0e-06 57.8 89 41.6
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 1.0e-06 57.8 159 50.3
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 1.4e-06 57.4 92 67.4
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 6.8e-06 55.1 194 33.0
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 8.8e-06 54.7 154 39.6


User provided reference genes

Program Settings