Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.1e-118 429.1 230 100.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 9.7e-111 403.7 230 93.0
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.0e-75 287.3 296 59.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 2.3e-64 249.6 277 55.6
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.9e-45 186.8 122 76.2
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.3e-42 176.0 311 40.5
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.8e-41 172.9 320 38.1
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-41 172.9 265 41.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-40 171.0 311 42.1
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.1e-40 171.0 311 42.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.4e-40 170.6 167 58.7
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.8e-40 170.2 282 41.5
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.3e-40 169.9 325 40.9
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.1e-40 169.5 268 42.2
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 4.0e-40 169.1 296 39.5
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.8e-40 168.3 282 41.1
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 8.9e-40 167.9 311 41.2
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.2e-39 167.5 261 47.5
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.6e-39 166.4 275 41.8
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.6e-39 166.4 311 40.8
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 3.4e-39 166.0 187 51.9
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 3.4e-39 166.0 181 53.6
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.4e-39 166.0 116 72.4
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 4.4e-39 165.6 311 40.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 4.4e-39 165.6 162 58.0
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.8e-39 165.2 176 55.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 9.9e-39 164.5 162 56.2
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.3e-38 164.1 174 56.3
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 1.3e-38 164.1 314 40.1
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.3e-38 164.1 328 38.4
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.2e-38 163.3 146 62.3
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.2e-38 163.3 159 62.9
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.9e-38 162.9 177 58.8
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.7e-38 162.5 325 36.9
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.7e-38 162.5 179 55.3
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 4.9e-38 162.2 304 41.1
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.9e-38 162.2 159 62.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 6.4e-38 161.8 304 41.1
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.1e-37 161.0 367 35.7
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.4e-37 160.6 199 49.7
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.4e-37 160.6 120 71.7
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.4e-37 159.8 328 37.5
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 3.2e-37 159.5 366 35.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 3.2e-37 159.5 200 50.0
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.2e-37 159.5 177 53.7
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.1e-37 159.1 172 52.9
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 4.1e-37 159.1 161 56.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 5.4e-37 158.7 109 74.3
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.1e-37 158.3 322 38.5
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 9.2e-37 157.9 109 71.6
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.1e-36 156.8 237 43.5
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.7e-36 156.4 291 39.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.7e-36 156.4 116 69.8
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.7e-36 156.4 278 41.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.7e-36 156.4 319 37.6
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.7e-36 156.4 108 74.1
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.7e-36 156.4 112 71.4
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.5e-36 156.0 171 52.6
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 6.0e-36 155.2 340 36.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.0e-36 155.2 239 42.7
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 6.0e-36 155.2 239 42.7
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.8e-36 154.8 176 49.4
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 7.8e-36 154.8 179 50.8
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 1.0e-35 154.5 157 56.1
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.3e-35 154.1 196 50.0
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.7e-35 153.7 161 57.1
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.3e-35 153.3 247 43.7
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.0e-35 152.9 247 43.7
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 3.9e-35 152.5 333 36.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 5.1e-35 152.1 147 56.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.6e-35 151.8 288 42.4
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 6.6e-35 151.8 305 37.7
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 8.6e-35 151.4 171 53.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.1e-34 151.0 217 45.6
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.9e-34 150.2 119 63.0
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.5e-34 149.8 232 41.4
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.5e-34 149.8 104 72.1
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.3e-34 149.1 348 35.6
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.6e-34 148.7 159 56.6
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.2e-33 147.5 158 54.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 1.2e-33 147.5 172 51.7
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.1e-33 146.7 222 44.1
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 2.1e-33 146.7 227 44.5
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 2.8e-33 146.4 170 50.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 3.6e-33 146.0 315 32.7
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.6e-33 146.0 186 50.5
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 3.1e-32 142.9 167 49.7
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.1e-32 142.9 179 49.7
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 3.1e-32 142.9 346 34.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.1e-32 142.9 295 40.0
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 4.0e-32 142.5 174 48.9
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 6.8e-32 141.7 122 57.4
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.4e-31 139.4 235 42.1
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.3e-30 137.5 261 40.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 2.2e-30 136.7 227 40.5
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 2.2e-30 136.7 227 40.5
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.9e-30 136.3 277 36.1
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.4e-30 135.2 109 67.9
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.4e-30 135.2 109 67.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.9e-29 133.7 223 40.4
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.4e-29 133.3 194 43.3
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.4e-29 133.3 108 70.4
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.4e-29 133.3 110 62.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 3.2e-29 132.9 113 60.2
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.2e-29 132.5 285 33.7
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 7.1e-29 131.7 116 56.9
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.1e-28 130.2 161 47.8
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.7e-28 129.8 211 39.8
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.5e-28 129.4 113 56.6
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 4.6e-28 129.0 147 49.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 4.6e-28 129.0 147 49.7
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 6.0e-28 128.6 147 49.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 7.8e-28 128.3 290 36.6
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.7e-27 127.1 273 35.9
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 2.3e-27 126.7 101 65.3
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 3.0e-27 126.3 231 39.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 3.9e-27 125.9 230 37.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.9e-27 125.9 147 50.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 3.9e-27 125.9 202 42.1
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 6.6e-27 125.2 156 46.8
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-27 124.8 254 37.0
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 1.1e-26 124.4 280 33.2
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.5e-26 124.0 183 44.8
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.9e-26 123.6 208 39.4
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 3.3e-26 122.9 174 44.8
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 3.3e-26 122.9 174 44.8
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 3.3e-26 122.9 207 39.6
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.3e-26 122.5 110 56.4
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 7.3e-26 121.7 275 34.2
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 7.3e-26 121.7 275 34.2
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 7.3e-26 121.7 275 34.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 2.8e-25 119.8 271 36.9
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 4.8e-25 119.0 114 60.5
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 6.2e-25 118.6 115 58.3
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-24 117.9 162 46.3
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-24 117.9 267 33.0
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-24 117.9 162 46.3
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-24 117.9 162 46.3
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.4e-24 117.5 117 48.7
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.8e-24 117.1 263 33.1
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 5.3e-24 115.5 302 32.1
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.3e-24 115.5 260 36.2
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 6.9e-24 115.2 241 41.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 6.9e-24 115.2 202 42.6
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 2.0e-23 113.6 110 59.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-22 110.9 171 38.6
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.2e-22 110.2 74 78.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.8e-22 109.4 74 78.4
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 8.4e-22 108.2 251 34.7
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.1e-21 107.8 163 47.9
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.4e-21 107.5 120 52.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.9e-21 107.1 114 51.8
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 3.2e-21 106.3 162 46.3
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 4.6e-20 102.4 111 55.9
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.7e-19 100.5 251 31.9
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 8.7e-19 98.2 426 27.0
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.1e-18 97.8 229 33.6
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.9e-18 97.1 111 44.1
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 2.5e-18 96.7 250 31.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.6e-18 95.5 258 33.3
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 5.6e-18 95.5 258 33.3
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 7.3e-18 95.1 145 43.4
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 3.6e-17 92.8 153 44.4
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.2e-14 83.6 82 53.7
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 8.4e-14 81.6 232 30.6
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 5.4e-13 79.0 282 30.1
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 2.3e-11 73.6 148 34.5
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 6.7e-11 72.0 43 79.1
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 2.9e-06 56.6 71 43.7
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 8.4e-06 55.1 105 34.3


User provided reference genes

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