Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013305 Chenopodium quinoa HOM05D001218 ORTHO05D022331 1.4e-84 316.2 154 100.0
Atru.chr13.35 Acer truncatum HOM05D001218 ORTHO05D004088 1.7e-18 96.7 90 53.3
Gohir.A02G087100 Gossypium hirsutum HOM05D001218 ORTHO05D004088 2.2e-18 96.3 92 52.2
Gohir.D02G101900 Gossypium hirsutum HOM05D001218 ORTHO05D004088 2.2e-18 96.3 92 52.2
Gorai.005G115600 Gossypium raimondii HOM05D001218 ORTHO05D004088 2.2e-18 96.3 92 52.2
QL02p016004 Quercus lobata HOM05D001218 ORTHO05D004088 2.2e-18 96.3 92 53.3
Duzib093G2014 Durio zibethinus HOM05D001218 ORTHO05D004088 2.9e-18 95.9 92 52.2
Duzib116G0454 Durio zibethinus HOM05D001218 ORTHO05D004088 2.9e-18 95.9 92 52.2
TWI36G0968 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 2.9e-18 95.9 92 52.2
ClCG11G019100 Citrullus lanatus HOM05D001218 ORTHO05D004088 3.8e-18 95.5 92 53.3
MELO3C017063.2 Cucumis melo HOM05D001218 ORTHO05D004088 3.8e-18 95.5 92 53.3
Thecc.08G098300 Theobroma cacao HOM05D001218 ORTHO05D004088 4.9e-18 95.1 98 49.0
TWI12G0956 Tripterygium wilfordii HOM05D001218 ORTHO05D004088 4.9e-18 95.1 92 51.1
TAR628G0316 Trochodendron aralioides HOM05D001218 ORTHO05D004088 4.9e-18 95.1 98 49.0
CARHR070100 Cardamine hirsuta HOM05D001218 ORTHO05D004088 6.4e-18 94.7 92 52.2
CsaV3_4G037690 Cucumis sativus L. HOM05D001218 ORTHO05D004088 6.4e-18 94.7 98 50.0
Nn5g31069 Nelumbo nucifera HOM05D001218 ORTHO05D004088 6.4e-18 94.7 92 50.0
Eucgr.F03611 Eucalyptus grandis HOM05D001218 ORTHO05D004088 8.4e-18 94.4 92 52.2
CANSAT25G3586 Cannabis sativa HOM05D001218 ORTHO05D004088 1.1e-17 94.0 92 51.1
Carub.0002s2346 Capsella rubella HOM05D001218 ORTHO05D004088 1.1e-17 94.0 92 51.1
MD06G1002300 Malus domestica HOM05D001218 ORTHO05D004088 1.1e-17 94.0 92 50.0
TAR625G0052 Trochodendron aralioides HOM05D001218 ORTHO05D004088 1.1e-17 94.0 98 49.0
Aa31LG7G5130 Aethionema arabicum HOM05D001218 ORTHO05D004088 1.4e-17 93.6 92 51.1
Potri.005G257800 Populus trichocarpa HOM05D001218 ORTHO05D004088 1.4e-17 93.6 98 48.0
CiPaw.07G131800 Carya illinoinensis HOM05D001218 ORTHO05D004088 1.9e-17 93.2 92 52.2
AUR62035185 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.9e-17 93.2 92 53.3
AUR62043319 Chenopodium quinoa HOM05D001218 ORTHO05D004088 1.9e-17 93.2 92 53.3
Sp5g31710 Schrenkiella parvula HOM05D001218 ORTHO05D004088 1.9e-17 93.2 92 51.1
Hund01817 Selenicereus undatus HOM05D001218 ORTHO05D004088 1.9e-17 93.2 98 50.0
Haze_22874 Corylus avellana HOM05D001218 ORTHO05D004088 2.4e-17 92.8 95 48.4
Sabra05G0199700 Salix brachista HOM05D001218 ORTHO05D004088 2.4e-17 92.8 98 46.9
Sc02g0009320 Simmondsia chinensis HOM05D001218 ORTHO05D004088 2.4e-17 92.8 92 52.2
AL2G36690 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 50.0
A07p42210 Brassica napus HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 50.0
BraA07t31750Z Brassica rapa HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 50.0
Cfa014150 Carpinus fangiana HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 50.0
Oeu042498.1 Olea europaea HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 50.0
Sabra02G0002000 Salix brachista HOM05D001218 ORTHO05D004088 3.2e-17 92.4 98 48.0
Sed0013544 Sechium edule HOM05D001218 ORTHO05D004088 3.2e-17 92.4 99 49.5
THA.LOC104813730 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 3.2e-17 92.4 92 51.1
Actinidia37903 Actinidia chinensis HOM05D001218 ORTHO05D004088 4.2e-17 92.0 81 56.8
AT1G76550 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 4.2e-17 92.0 92 50.0
Thhalv10018291m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 4.2e-17 92.0 92 50.0
TAR376G0228 Trochodendron aralioides HOM05D001218 ORTHO05D004088 4.2e-17 92.0 98 46.9
CiPaw.08G078100 Carya illinoinensis HOM05D001218 ORTHO05D004088 5.4e-17 91.7 92 48.9
MBI04_g42538_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 5.4e-17 91.7 92 48.9
Prupe.5G003400 Prunus persica HOM05D001218 ORTHO05D004088 5.4e-17 91.7 92 47.8
Lj4C3G12 Lonicera japonica HOM05D001218 ORTHO05D004088 9.3e-17 90.9 81 54.3
EL10Ac1g01822 Beta vulgaris HOM05D001218 ORTHO05D004088 1.2e-16 90.5 81 55.6
CARHR021410 Cardamine hirsuta HOM05D001218 ORTHO05D004088 1.2e-16 90.5 94 51.1
Manes.18G001100 Manihot esculenta HOM05D001218 ORTHO05D004088 1.2e-16 90.5 92 47.8
PSO017G6550 Papaver somniferum HOM05D001218 ORTHO05D004088 1.2e-16 90.5 116 39.7
PSO170G0003 Papaver somniferum HOM05D001218 ORTHO05D004088 1.2e-16 90.5 116 39.7
THA.LOC104804960 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.2e-16 90.5 92 48.9
BcaC08g47163 Brassica carinata HOM05D001218 ORTHO05D004088 1.6e-16 90.1 92 48.9
Ciclev10000595m.g Citrus clementina HOM05D001218 ORTHO05D004088 1.6e-16 90.1 92 46.7
Migut.C00344 Erythranthe guttata HOM05D001218 ORTHO05D004088 1.6e-16 90.1 81 55.6
THA.LOC104812017 Tarenaya hassleriana HOM05D001218 ORTHO05D004088 1.6e-16 90.1 92 48.9
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 2.1e-16 89.7 81 54.3
MSTRG.24899 Avicennia marina HOM05D001218 ORTHO05D004088 2.1e-16 89.7 98 48.0
BcaB07g32089 Brassica carinata HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
BcaC05g26002 Brassica carinata HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
A06p16940 Brassica napus HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
C05p19600 Brassica napus HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
BolC5t30663H Brassica oleracea HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
BraA06t24804Z Brassica rapa HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
Cpa.g.c24967.5 Carica papaya HOM05D001218 ORTHO05D004088 2.1e-16 89.7 94 50.0
Dinv23340 Davidia involucrata HOM05D001218 ORTHO05D004088 2.1e-16 89.7 81 54.3
Hma1.2p1_0489F.1_g164180 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 2.1e-16 89.7 81 54.3
Hma1.2p1_0810F.1_g221990 Hydrangea macrophylla HOM05D001218 ORTHO05D004088 2.1e-16 89.7 85 51.8
BcaB03g12841 Brassica carinata HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
BcaC07g39066 Brassica carinata HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
BcaC08g47232 Brassica carinata HOM05D001218 ORTHO05D004088 2.7e-16 89.4 92 48.9
A08p29140 Brassica napus HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
C08p20520 Brassica napus HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
BolC8t49679H Brassica oleracea HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
BraA08t34850Z Brassica rapa HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
CSS0013185 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 2.7e-16 89.4 81 53.1
Carub.0001s2042 Capsella rubella HOM05D001218 ORTHO05D004088 2.7e-16 89.4 94 50.0
Lsat_1_v5_gn_9_48180 Lactuca sativa HOM05D001218 ORTHO05D004088 2.7e-16 89.4 81 55.6
PGR031G3703 Punica granatum HOM05D001218 ORTHO05D004088 2.7e-16 89.4 92 50.0
Sed0027532 Sechium edule HOM05D001218 ORTHO05D004088 2.7e-16 89.4 99 48.5
PGSC0003DMG400010007 Solanum tuberosum HOM05D001218 ORTHO05D004088 2.7e-16 89.4 92 47.8
Potri.002G003100 Populus trichocarpa HOM05D001218 ORTHO05D004088 3.5e-16 89.0 98 48.0
Hund01814 Selenicereus undatus HOM05D001218 ORTHO05D004088 3.5e-16 89.0 56 73.2
SGA_v2.0_scaffold161G37861 Striga asiatica HOM05D001218 ORTHO05D004088 3.5e-16 89.0 70 62.9
AL1G33980 Arabidopsis lyrata HOM05D001218 ORTHO05D004088 4.6e-16 88.6 81 54.3
AT1G20950 Arabidopsis thaliana HOM05D001218 ORTHO05D004088 4.6e-16 88.6 81 54.3
CSS0003035 Camellia sinensis var. sinensis HOM05D001218 ORTHO05D004088 4.6e-16 88.6 81 54.3
Eucgr.F01823 Eucalyptus grandis HOM05D001218 ORTHO05D004088 4.6e-16 88.6 92 48.9
Nitab4.5_0000464g0120 Nicotiana tabacum HOM05D001218 ORTHO05D004088 4.6e-16 88.6 92 46.7
Rhsim06G0002000 Rhododendron simsii HOM05D001218 ORTHO05D004088 4.6e-16 88.6 81 53.1
Zm00001eb188910 Zea mays HOM05D001218 ORTHO05D004088 4.6e-16 88.6 90 47.8
Thhalv10007087m.g Eutrema salsugineum HOM05D001218 ORTHO05D004088 6.0e-16 88.2 94 50.0
HanXRQChr16g0512491 Helianthus annuus HOM05D001218 ORTHO05D004088 6.0e-16 88.2 81 54.3
Peaxi162Scf00385g00622 Petunia axillaris HOM05D001218 ORTHO05D004088 6.0e-16 88.2 84 50.0
Solyc04g082880.4 Solanum lycopersicum HOM05D001218 ORTHO05D004088 6.0e-16 88.2 92 46.7
Solyc12g095760.2 Solanum lycopersicum HOM05D001218 ORTHO05D004088 6.0e-16 88.2 92 46.7
Sopen04g036520 Solanum pennellii HOM05D001218 ORTHO05D004088 6.0e-16 88.2 92 46.7
Sopen12g031660 Solanum pennellii HOM05D001218 ORTHO05D004088 6.0e-16 88.2 92 46.7
PGSC0003DMG400029309 Solanum tuberosum HOM05D001218 ORTHO05D004088 6.0e-16 88.2 92 46.7
Aqoxy5G00952 Aquilegia oxysepala HOM05D001218 ORTHO05D004088 7.9e-16 87.8 98 45.9
CAN.G1330.23 Capsicum annuum HOM05D001218 ORTHO05D004088 7.9e-16 87.8 92 46.7
Manes.05G129500 Manihot esculenta HOM05D001218 ORTHO05D004088 7.9e-16 87.8 90 47.8
Peaxi162Scf00064g01432 Petunia axillaris HOM05D001218 ORTHO05D004088 7.9e-16 87.8 98 44.9
Sp1g18650 Schrenkiella parvula HOM05D001218 ORTHO05D004088 7.9e-16 87.8 94 48.9
Zm00001eb252630 Zea mays HOM05D001218 ORTHO05D004088 7.9e-16 87.8 92 46.7
MSTRG.1008 Avicennia marina HOM05D001218 ORTHO05D004088 1.0e-15 87.4 81 53.1
CDE10G0658 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 1.0e-15 87.4 92 48.9
Nn6g31597 Nelumbo nucifera HOM05D001218 ORTHO05D004088 1.0e-15 87.4 104 46.2
BolC6t40103H Brassica oleracea HOM05D001218 ORTHO05D004088 1.3e-15 87.0 92 47.8
ECA232G2106 Erigeron canadensis HOM05D001218 ORTHO05D004088 1.3e-15 87.0 81 54.3
HanXRQChr14g0427931 Helianthus annuus HOM05D001218 ORTHO05D004088 1.3e-15 87.0 85 51.8
Nitab4.5_0001309g0150 Nicotiana tabacum HOM05D001218 ORTHO05D004088 1.3e-15 87.0 81 51.9
Nitab4.5_0003423g0060 Nicotiana tabacum HOM05D001218 ORTHO05D004088 1.3e-15 87.0 81 51.9
C06p50810 Brassica napus HOM05D001218 ORTHO05D004088 2.3e-15 86.3 92 46.7
CAN.G208.42 Capsicum annuum HOM05D001218 ORTHO05D004088 2.3e-15 86.3 56 67.9
Migut.N02993 Erythranthe guttata HOM05D001218 ORTHO05D004088 3.0e-15 85.9 81 53.1
DCAR_017621 Daucus carota HOM05D001218 ORTHO05D004088 3.9e-15 85.5 80 53.8
Oeu035766.1 Olea europaea HOM05D000150 ORTHO05D000108 3.9e-15 85.5 81 53.1
Actinidia15552 Actinidia chinensis HOM05D001218 ORTHO05D004088 5.1e-15 85.1 81 51.9
VMungo1215G2664 Vigna mungo HOM05D001218 ORTHO05D004088 5.1e-15 85.1 98 45.9
ATR0605G031 Amborella trichopoda HOM05D001218 ORTHO05D004088 6.6e-15 84.7 81 54.3
Oeu064732.1 Olea europaea HOM05D001218 ORTHO05D004088 6.6e-15 84.7 81 53.1
GSVIVG01013442001 Vitis vinifera HOM05D001218 ORTHO05D004088 6.6e-15 84.7 92 45.7
arahy.Tifrunner.gnm1.ann1.BFE9YH Arachis hypogaea HOM05D001218 ORTHO05D004088 8.7e-15 84.3 92 47.8
MSTRG.24523 Avicennia marina HOM05D001218 ORTHO05D004088 8.7e-15 84.3 81 51.9
FvH4_5g26380 Fragaria vesca HOM05D001218 ORTHO05D004088 8.7e-15 84.3 93 46.2
FAN08G1986 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.7e-15 84.3 93 46.2
FAN13G0530 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.7e-15 84.3 93 46.2
FAN18G2420 Fragaria x ananassa HOM05D001218 ORTHO05D004088 8.7e-15 84.3 93 46.2
Glyma.20G007400 Glycine max HOM05D001218 ORTHO05D004088 8.7e-15 84.3 92 47.8
Lalb_Chr10g0095321 Lupinus albus HOM05D001218 ORTHO05D004088 8.7e-15 84.3 98 44.9
vmacro21744 Vaccinium macrocarpon HOM05D001218 ORTHO05D004088 8.7e-15 84.3 81 51.9
DCAR_013949 Daucus carota HOM05D001218 ORTHO05D004088 1.1e-14 84.0 80 52.5
Medtr1g035230 Medicago truncatula HOM05D001218 ORTHO05D004088 1.1e-14 84.0 92 47.8
Phvul.003G009600 Phaseolus vulgaris HOM05D001218 ORTHO05D004088 1.1e-14 84.0 92 46.7
Zm00001eb381920 Zea mays HOM05D001218 ORTHO05D004088 1.1e-14 84.0 92 45.7
CDE05G0891 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 1.5e-14 83.6 92 44.6
HPP92_007461 Vanilla planifolia HOM05D001218 ORTHO05D004088 1.5e-14 83.6 91 47.3
FAN04G0409 Fragaria x ananassa HOM05D001218 ORTHO05D004088 1.9e-14 83.2 56 62.5
Ca_12496_v3 Cicer arietinum L. HOM05D001218 ORTHO05D004088 2.5e-14 82.8 98 44.9
Os06g0326400 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 2.5e-14 82.8 92 45.7
Lsat_1_v5_gn_8_26721 Lactuca sativa HOM05D001218 ORTHO05D004088 3.3e-14 82.4 94 45.7
Psat6g131840 Pisum sativum HOM05D001218 ORTHO05D004088 3.3e-14 82.4 92 46.7
RcHm_v2.0_Chr7g0217221 Rosa chinensis HOM05D001218 ORTHO05D004088 3.3e-14 82.4 93 45.2
Lalb_Chr17g0338171 Lupinus albus HOM05D001218 ORTHO05D004088 4.3e-14 82.0 92 45.7
arahy.Tifrunner.gnm1.ann1.H559FZ Arachis hypogaea HOM05D001218 ORTHO05D004088 5.6e-14 81.6 92 46.7
Glyma.07G160500 Glycine max HOM05D001218 ORTHO05D004088 5.6e-14 81.6 92 46.7
Oeu035767.1 Olea europaea HOM05D001218 ORTHO05D004088 5.6e-14 81.6 81 51.9
TPR.G18596 Trifolium pratense HOM05D001218 ORTHO05D004088 9.6e-14 80.9 90 46.7
Lsat_1_v5_gn_2_3161 Lactuca sativa HOM05D001218 ORTHO05D004088 1.3e-13 80.5 85 49.4
CDE05G0435 Ceratophyllum demersum HOM05D001218 ORTHO05D004088 1.6e-13 80.1 79 49.4
MBI19_g39687_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D022331 2.8e-13 79.3 65 60.0
Os02g0714200 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 2.8e-13 79.3 92 42.4
HanXRQChr08g0216771 Helianthus annuus HOM05D001218 ORTHO05D004088 3.6e-13 79.0 94 43.6
Lj2g0017094 Lotus japonicus HOM05D001218 ORTHO05D004088 4.8e-13 78.6 98 41.8
MBI01_g22962_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 6.2e-13 78.2 81 49.4
MBI18_g13002_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D022331 6.2e-13 78.2 56 60.7
SMO115G0046 Selaginella moellendorffii HOM05D001218 ORTHO05D004088 6.2e-13 78.2 98 40.8
MBI04_g22928_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D004088 1.4e-12 77.0 81 46.9
TAR375G0723 Trochodendron aralioides HOM05D001218 ORTHO05D004088 1.4e-12 77.0 81 46.9
MBI17_g33116_MAGBIO Magnolia biondii HOM05D001218 ORTHO05D011977 4.0e-12 75.5 62 54.8
ATR0057G131 Amborella trichopoda HOM05D001218 ORTHO05D004088 5.3e-12 75.1 104 42.3
SEGI_18001 Sequoiadendron giganteum HOM05D001218 ORTHO05D004088 5.3e-12 75.1 96 39.6
AUR62035008 Chenopodium quinoa HOM05D000759 ORTHO05D000574 9.0e-12 74.3 61 59.0
ECA233G0383 Erigeron canadensis HOM05D001218 ORTHO05D004088 9.0e-12 74.3 81 45.7
Lalb_Chr04g0258861 Lupinus albus HOM05D001218 ORTHO05D004088 2.0e-11 73.2 78 44.9
Nn1g08050 Nelumbo nucifera HOM05D001218 ORTHO05D004088 2.0e-11 73.2 81 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4948 Anthoceros agrestis HOM05D001218 ORTHO05D004088 7.6e-11 71.2 98 38.8
PSO210G1993 Papaver somniferum HOM05D001218 ORTHO05D004088 7.6e-11 71.2 81 44.4
PSO210G6488 Papaver somniferum HOM05D001218 ORTHO05D004088 9.9e-11 70.9 81 44.4
Mapoly0105s0043 Marchantia polymorpha HOM05D001218 ORTHO05D004088 1.3e-10 70.5 98 36.7
ECA233G6219 Erigeron canadensis HOM05D001218 ORTHO05D004088 2.2e-10 69.7 62 51.6
Potri.010G106950 Populus trichocarpa HOM05D001218 ORTHO05D022331 5.5e-09 65.1 45 62.2
Pp3c21_16140 Physcomitrium patens HOM05D001218 ORTHO05D004088 3.5e-08 62.4 116 30.2
Zm00001eb153820 Zea mays HOM05D001218 ORTHO05D011584 1.8e-07 60.1 67 41.8
Zm00001eb043000 Zea mays HOM05D001218 ORTHO05D004088 2.3e-07 59.7 67 41.8
HanXRQChr05g0161401 Helianthus annuus HOM05D001218 ORTHO05D004088 3.0e-07 59.3 94 38.3
Os09g0298100 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 3.9e-07 58.9 62 41.9
Pp3c18_9850 Physcomitrium patens HOM05D001218 ORTHO05D003142 3.9e-07 58.9 62 41.9
SGA_v2.0_scaffold73G24447 Striga asiatica HOM05D001218 ORTHO05D004088 3.9e-07 58.9 67 40.3
EL10Ac7g16425 Beta vulgaris HOM05D000198 ORTHO05D005959 1.5e-06 57.0 30 83.3
AUR62009904 Chenopodium quinoa HOM05D000198 ORTHO05D005959 1.5e-06 57.0 30 83.3
Psat7g019920 Pisum sativum HOM05D001947 ORTHO05D015328 4.3e-06 55.5 67 43.3
AUR62001464 Chenopodium quinoa HOM05D000198 ORTHO05D005959 9.6e-06 54.3 30 76.7
Os08g0345700 Oryza sativa ssp. japonica HOM05D001218 ORTHO05D004088 9.6e-06 54.3 67 37.3


User provided reference genes

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