Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013280 Chenopodium quinoa HOM05D005886 ORTHO05D007512 5.1e-57 224.2 112 100.0
AUR62011207 Chenopodium quinoa HOM05D005886 ORTHO05D007512 3.3e-48 194.9 126 82.5
EL10Ac4g08740 Beta vulgaris HOM05D005886 ORTHO05D007512 8.0e-26 120.6 241 36.9
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 1.8e-22 109.4 75 73.3
Hund07230 Selenicereus undatus HOM05D005886 ORTHO05D007512 7.0e-22 107.5 75 74.7
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 1.6e-21 106.3 109 53.2
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 5.9e-21 104.4 77 70.1
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 5.9e-21 104.4 77 70.1
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 7.7e-21 104.0 77 70.1
TAR623G1656 Trochodendron aralioides HOM05D005886 ORTHO05D007512 1.7e-20 102.8 73 68.5
CAN.G143.55 Capsicum annuum HOM05D005886 ORTHO05D007512 2.2e-20 102.4 77 70.1
Nn6g34619 Nelumbo nucifera HOM05D005886 ORTHO05D007512 2.2e-20 102.4 73 68.5
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 1.1e-19 100.1 76 68.4
Atru.chr12.1089 Acer truncatum HOM05D005886 ORTHO05D007512 1.5e-19 99.8 74 68.9
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 2.5e-19 99.0 107 49.5
TWI63G1702 Tripterygium wilfordii HOM05D005886 ORTHO05D007512 2.5e-19 99.0 72 70.8
Hma1.2p1_0098F.1_g048230 Hydrangea macrophylla HOM05D005886 ORTHO05D007512 3.2e-19 98.6 73 69.9
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 4.2e-19 98.2 73 65.8
Dinv03810 Davidia involucrata HOM05D005886 ORTHO05D007512 9.4e-19 97.1 74 68.9
CSS0026439 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 1.2e-18 96.7 73 67.1
Prupe.2G074600 Prunus persica HOM05D005886 ORTHO05D007512 1.2e-18 96.7 79 60.8
CSS0019543 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 2.1e-18 95.9 73 67.1
Sc09g0004780 Simmondsia chinensis HOM05D005886 ORTHO05D007512 2.7e-18 95.5 69 69.6
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 3.6e-18 95.1 64 71.9
Rhsim03G0094200 Rhododendron simsii HOM05D005886 ORTHO05D007512 4.7e-18 94.7 76 67.1
CSS0035441 Camellia sinensis var. sinensis HOM05D005886 ORTHO05D007512 6.1e-18 94.4 74 63.5
MD02G1258000 Malus domestica HOM05D005886 ORTHO05D007512 6.1e-18 94.4 80 56.2
Migut.F00830 Erythranthe guttata HOM05D005886 ORTHO05D007512 8.0e-18 94.0 108 50.0
Lj3A921T39 Lonicera japonica HOM05D005886 ORTHO05D007512 1.0e-17 93.6 64 70.3
MBI11_g01323_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.8e-17 92.8 77 62.3
MBI11_g46414_MAGBIO Magnolia biondii HOM05D005886 ORTHO05D007512 1.8e-17 92.8 77 62.3
QL04p048796 Quercus lobata HOM05D005886 ORTHO05D007512 1.8e-17 92.8 77 67.5
Manes.10G059400 Manihot esculenta HOM05D005886 ORTHO05D007512 2.3e-17 92.4 75 64.0
Actinidia06678 Actinidia chinensis HOM05D005886 ORTHO05D007512 5.2e-17 91.3 65 70.8
Sed0002183 Sechium edule HOM05D005886 ORTHO05D007512 5.2e-17 91.3 60 68.3
Aqoxy1G00613 Aquilegia oxysepala HOM05D005886 ORTHO05D007512 1.5e-16 89.7 76 56.6
ClCG08G008440 Citrullus lanatus HOM05D005886 ORTHO05D007512 3.3e-16 88.6 77 57.1
PSO384G2277 Papaver somniferum HOM05D005886 ORTHO05D007512 3.3e-16 88.6 76 59.2
RcHm_v2.0_Chr1g0332231 Rosa chinensis HOM05D005886 ORTHO05D007512 3.3e-16 88.6 73 60.3
MSTRG.9023 Avicennia marina HOM05D005886 ORTHO05D007512 4.4e-16 88.2 60 66.7
PSO339G0105 Papaver somniferum HOM05D005886 ORTHO05D007512 4.4e-16 88.2 76 59.2
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 5.7e-16 87.8 75 56.0
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 7.5e-16 87.4 84 57.1
Gorai.003G100800 Gossypium raimondii HOM05D005886 ORTHO05D007512 7.5e-16 87.4 84 57.1
FvH4_7g05470 Fragaria vesca HOM05D005886 ORTHO05D007512 1.3e-15 86.7 73 58.9
FAN01G1003 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.3e-15 86.7 73 58.9
FAN10G0591 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.3e-15 86.7 73 58.9
Gohir.A03G069600 Gossypium hirsutum HOM05D005886 ORTHO05D007512 1.3e-15 86.7 84 57.1
Eucgr.G02665 Eucalyptus grandis HOM05D005886 ORTHO05D007512 1.7e-15 86.3 105 48.6
Lalb_Chr04g0248371 Lupinus albus HOM05D005886 ORTHO05D007512 1.7e-15 86.3 73 63.0
Potri.008G015600 Populus trichocarpa HOM05D005886 ORTHO05D007512 2.8e-15 85.5 78 60.3
Cpa.g.sc33.126 Carica papaya HOM05D005886 ORTHO05D007512 3.7e-15 85.1 46 87.0
FAN03G3046 Fragaria x ananassa HOM05D005886 ORTHO05D007512 3.7e-15 85.1 73 57.5
PGR142G2015 Punica granatum HOM05D005886 ORTHO05D007512 3.7e-15 85.1 77 55.8
FAN10G3562 Fragaria x ananassa HOM05D005886 ORTHO05D007512 4.8e-15 84.7 73 57.5
arahy.Tifrunner.gnm1.ann1.884D9P Arachis hypogaea HOM05D005886 ORTHO05D007512 6.3e-15 84.3 74 60.8
arahy.Tifrunner.gnm1.ann1.V9EI6C Arachis hypogaea HOM05D005886 ORTHO05D007512 6.3e-15 84.3 74 60.8
arahy.Tifrunner.gnm1.ann1.VD7X19 Arachis hypogaea HOM05D005886 ORTHO05D007512 6.3e-15 84.3 74 60.8
Cc02_g09270 Coffea canephora HOM05D005886 ORTHO05D007512 1.1e-14 83.6 81 55.6
FAN01G0807 Fragaria x ananassa HOM05D005886 ORTHO05D007512 1.1e-14 83.6 75 58.7
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 1.1e-14 83.6 80 55.0
arahy.Tifrunner.gnm1.ann1.AJNI4B Arachis hypogaea HOM05D005886 ORTHO05D007512 1.4e-14 83.2 77 58.4
arahy.Tifrunner.gnm1.ann1.G6ZNRX Arachis hypogaea HOM05D005886 ORTHO05D007512 1.4e-14 83.2 77 58.4
CsaV3_6G004430 Cucumis sativus L. HOM05D005886 ORTHO05D007512 1.4e-14 83.2 73 57.5
COL.COLO4_37594 Corchorus olitorius HOM05D005886 ORTHO05D007512 1.8e-14 82.8 70 58.6
DCAR_025632 Daucus carota HOM05D005886 ORTHO05D007512 1.8e-14 82.8 65 60.0
ECA238G0088 Erigeron canadensis HOM05D005886 ORTHO05D007512 1.8e-14 82.8 54 72.2
Psat2g011680 Pisum sativum HOM05D005886 ORTHO05D007512 2.4e-14 82.4 73 52.1
arahy.Tifrunner.gnm1.ann1.WENH69 Arachis hypogaea HOM05D005886 ORTHO05D007512 4.1e-14 81.6 72 59.7
Ciclev10016560m.g Citrus clementina HOM05D005886 ORTHO05D007512 5.3e-14 81.3 74 59.5
Potri.010G244500 Populus trichocarpa HOM05D005886 ORTHO05D007512 5.3e-14 81.3 75 52.0
Sabra10G0191000 Salix brachista HOM05D005886 ORTHO05D007512 7.0e-14 80.9 78 56.4
SalBow3G3384 Salvia bowleyana HOM05D005886 ORTHO05D007512 9.1e-14 80.5 109 43.1
MELO3C019914.2 Cucumis melo HOM05D005886 ORTHO05D007512 1.2e-13 80.1 73 54.8
ATR1127G050 Amborella trichopoda HOM05D005886 ORTHO05D007512 1.6e-13 79.7 46 76.1
FvH4_7g05420 Fragaria vesca HOM05D005886 ORTHO05D007512 4.5e-13 78.2 77 55.8
Lsat_1_v5_gn_2_106281 Lactuca sativa HOM05D005886 ORTHO05D007512 4.5e-13 78.2 83 51.8
Phvul.008G268400 Phaseolus vulgaris HOM05D005886 ORTHO05D007512 4.5e-13 78.2 73 56.2
Sabra08G0009500 Salix brachista HOM05D005886 ORTHO05D007512 4.5e-13 78.2 78 52.6
LjContig00272g0011155 Lotus japonicus HOM05D005886 ORTHO05D007512 5.9e-13 77.8 73 50.7
Ca_30698_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 1.0e-12 77.0 52 67.3
TPR.G1192 Trifolium pratense HOM05D005886 ORTHO05D007512 1.0e-12 77.0 53 69.8
Glyma.14G022800 Glycine max HOM05D005886 ORTHO05D007512 1.3e-12 76.6 76 55.3
HanXRQChr07g0194431 Helianthus annuus HOM05D005886 ORTHO05D007512 1.7e-12 76.3 82 48.8
HanXRQChr07g0186821 Helianthus annuus HOM05D005886 ORTHO05D007512 2.2e-12 75.9 46 71.7
HPP92_013285 Vanilla planifolia HOM05D005886 ORTHO05D007512 6.5e-12 74.3 69 56.5
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 8.5e-12 73.9 52 63.5
GSVIVG01034602001 Vitis vinifera HOM05D005886 ORTHO05D007512 8.5e-12 73.9 59 69.5
AT4G32605 Arabidopsis thaliana HOM05D005886 ORTHO05D007512 1.5e-11 73.2 76 52.6
HPP92_013299 Vanilla planifolia HOM05D005886 ORTHO05D007512 1.5e-11 73.2 76 51.3
CDE10G0808 Ceratophyllum demersum HOM05D005886 ORTHO05D007512 1.9e-11 72.8 49 65.3
Zm00001eb151940 Zea mays HOM05D005886 ORTHO05D007512 1.9e-11 72.8 51 68.6
Carub.0007s0794 Capsella rubella HOM05D005886 ORTHO05D007512 2.5e-11 72.4 77 50.6
Duzib205G1746 Durio zibethinus HOM05D005886 ORTHO05D007512 2.5e-11 72.4 104 45.2
Glyma.02G291900 Glycine max HOM05D005886 ORTHO05D007512 2.5e-11 72.4 71 53.5
VMungo0647G0838 Vigna mungo HOM05D005886 ORTHO05D007512 2.5e-11 72.4 73 52.1
BcaC09g52051 Brassica carinata HOM05D005886 ORTHO05D007512 7.2e-11 70.9 48 68.8
THA.LOC104803777 Tarenaya hassleriana HOM05D005886 ORTHO05D007512 7.2e-11 70.9 81 45.7
A01p05780 Brassica napus HOM05D005886 ORTHO05D007512 9.4e-11 70.5 48 68.8
BolC1t00631H Brassica oleracea HOM05D005886 ORTHO05D007512 9.4e-11 70.5 48 68.8
BraA01t00547Z Brassica rapa HOM05D005886 ORTHO05D007512 9.4e-11 70.5 48 68.8
Sp7g30380 Schrenkiella parvula HOM05D005886 ORTHO05D007512 9.4e-11 70.5 46 69.6
C01p06350 Brassica napus HOM05D005886 ORTHO05D007512 1.2e-10 70.1 48 68.8
Thhalv10026176m.g Eutrema salsugineum HOM05D005886 ORTHO05D007512 1.2e-10 70.1 77 50.6
AL7G19160 Arabidopsis lyrata HOM05D005886 ORTHO05D007512 1.6e-10 69.7 76 51.3
Os01g0771100 Oryza sativa ssp. japonica HOM05D005886 ORTHO05D007512 1.6e-10 69.7 45 71.1
BcaB05g22897 Brassica carinata HOM05D005886 ORTHO05D007512 3.4e-08 62.0 39 69.2
Ca_06327_v3 Cicer arietinum L. HOM05D005886 ORTHO05D007512 9.8e-08 60.5 52 57.7
Nn2g14223 Nelumbo nucifera HOM05D005886 ORTHO05D007512 1.3e-07 60.1 53 54.7
Aa31sc91G60 Aethionema arabicum HOM05D005886 ORTHO05D007512 1.7e-07 59.7 39 66.7


User provided reference genes

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