Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 3.4e-26 120.9 63 100.0
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-26 120.6 63 98.4
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 4.5e-26 120.6 63 98.4
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.9e-21 105.1 63 85.7
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-21 105.1 63 81.0
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.9e-21 105.1 63 81.0
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 9.6e-21 102.8 63 81.0
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.1e-20 101.7 63 77.8
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 4.8e-20 100.5 63 82.5
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 4.8e-20 100.5 61 77.0
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.4e-19 98.2 63 76.2
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.1e-19 97.8 63 79.4
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.1e-19 97.8 63 76.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 3.1e-19 97.8 63 76.2
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.3e-19 97.1 63 76.2
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 6.9e-19 96.7 63 76.2
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 9.0e-19 96.3 61 77.0
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.0e-19 96.3 63 77.8
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 1.2e-18 95.9 63 76.2
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.5e-18 95.5 59 79.7
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.5e-18 95.5 63 74.6
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 1.5e-18 95.5 63 76.2
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.0e-18 95.1 63 73.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.0e-18 95.1 63 74.6
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.0e-18 95.1 63 76.2
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 2.6e-18 94.7 63 74.6
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.6e-18 94.7 63 73.0
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.4e-18 94.4 59 76.3
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 3.4e-18 94.4 63 73.0
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 3.4e-18 94.4 63 73.0
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 4.5e-18 94.0 63 74.6
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 4.5e-18 94.0 64 78.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 4.5e-18 94.0 59 76.3
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 4.5e-18 94.0 63 76.2
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.5e-18 94.0 63 73.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 4.5e-18 94.0 63 73.0
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 4.5e-18 94.0 63 73.0
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 5.9e-18 93.6 59 74.6
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 5.9e-18 93.6 63 73.0
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 7.6e-18 93.2 59 76.3
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 7.6e-18 93.2 64 76.6
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.0e-17 92.8 62 71.0
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.0e-17 92.8 64 76.6
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.3e-17 92.4 63 68.3
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.3e-17 92.4 63 71.4
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 1.7e-17 92.0 63 71.4
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.7e-17 92.0 63 71.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.2e-17 91.7 63 73.0
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.2e-17 91.7 63 74.6
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 2.9e-17 91.3 63 73.0
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 3.8e-17 90.9 53 84.9
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 3.8e-17 90.9 63 69.8
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 3.8e-17 90.9 63 73.0
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.0e-17 90.5 55 78.2
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 5.0e-17 90.5 59 76.3
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.0e-17 90.5 59 71.2
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.5e-17 90.1 63 74.6
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 6.5e-17 90.1 59 76.3
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.5e-17 89.7 63 69.8
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 8.5e-17 89.7 63 69.8
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 8.5e-17 89.7 63 74.6
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 8.5e-17 89.7 64 70.3
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 8.5e-17 89.7 64 70.3
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-17 89.7 64 70.3
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-17 89.7 64 70.3
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 8.5e-17 89.7 64 70.3
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.1e-16 89.4 59 72.9
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.1e-16 89.4 59 74.6
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.9e-16 88.6 57 75.4
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 1.9e-16 88.6 63 68.3
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.9e-16 88.6 63 69.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 1.9e-16 88.6 59 69.5
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.9e-16 88.6 63 69.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.5e-16 88.2 63 71.4
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.5e-16 88.2 64 68.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 2.5e-16 88.2 59 72.9
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.2e-16 87.8 63 73.0
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.2e-16 87.8 63 71.4
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 5.5e-16 87.0 61 70.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 9.3e-16 86.3 63 65.1
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.6e-15 85.5 58 74.1
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.6e-15 85.5 64 70.3
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 1.6e-15 85.5 63 65.1
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.6e-15 85.5 59 69.5
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.1e-15 85.1 63 66.7
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.7e-15 84.7 59 69.5
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 3.6e-15 84.3 63 71.4
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 3.6e-15 84.3 63 71.4
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 3.6e-15 84.3 63 71.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.6e-15 84.3 56 75.0
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 4.6e-15 84.0 61 65.6
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 6.1e-15 83.6 57 70.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 6.1e-15 83.6 61 67.2
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 6.1e-15 83.6 63 63.5
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.1e-15 83.6 64 64.1
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 7.9e-15 83.2 63 71.4
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.0e-14 82.8 63 68.3
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.0e-14 82.8 63 68.3
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.0e-14 82.8 63 71.4
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.0e-14 82.8 63 71.4
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.0e-14 82.8 63 71.4
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.0e-14 82.8 64 64.1
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.3e-14 82.4 64 64.1
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.3e-14 81.6 63 69.8
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.3e-14 81.6 64 67.2
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 3.0e-14 81.3 54 75.9
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 5.1e-14 80.5 63 69.8
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.1e-14 80.5 63 69.8
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 5.1e-14 80.5 54 74.1
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-13 78.6 63 65.1
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.9e-13 78.6 63 61.9
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 4.3e-13 77.4 91 50.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 1.3e-12 75.9 55 67.3
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-12 75.5 46 80.4
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 2.8e-12 74.7 94 46.8
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 3.7e-12 74.3 92 48.9
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.8e-12 73.9 63 60.3
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 6.3e-12 73.6 63 60.3
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 6.3e-12 73.6 53 67.9
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.2e-12 73.2 63 60.3
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-11 72.8 60 65.0
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 6.9e-11 70.1 61 57.4
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 2.6e-10 68.2 56 60.7
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 7.7e-10 66.6 63 54.0
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 2.2e-09 65.1 63 54.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.8e-09 64.3 63 52.4
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.5e-08 61.6 38 76.3
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.1e-07 58.5 29 96.6
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 6.1e-07 57.0 57 56.1
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.4e-06 55.8 29 86.2
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.3e-06 55.1 33 78.8
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.3e-06 55.1 58 51.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.0e-06 54.7 59 49.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.1e-06 53.9 52 53.8
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 8.8e-06 53.1 29 89.7
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 8.8e-06 53.1 32 78.1
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 8.8e-06 53.1 32 78.1


User provided reference genes

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