Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.2e-48 196.1 92 100.0
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.7e-37 159.1 94 77.7
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 4.8e-37 157.5 92 79.3
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 4.1e-36 154.5 92 81.5
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 7.7e-27 123.6 81 61.7
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.3e-26 122.9 83 63.9
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 2.2e-26 122.1 83 61.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.9e-26 121.7 83 62.7
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 8.5e-26 120.2 79 64.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.1e-25 119.8 83 60.2
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.9e-25 119.0 95 62.1
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 3.2e-25 118.2 83 61.4
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.5e-25 117.5 79 60.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 5.5e-25 117.5 79 60.8
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 7.2e-25 117.1 83 57.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 7.2e-25 117.1 83 60.2
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 7.2e-25 117.1 84 61.9
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.2e-24 116.3 79 62.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.7e-24 115.2 87 57.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.7e-24 115.2 84 61.9
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 2.7e-24 115.2 83 59.0
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.1e-24 114.0 79 59.5
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 6.1e-24 114.0 84 60.7
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 8.0e-24 113.6 77 64.9
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.0e-23 113.2 90 56.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.0e-23 113.2 87 57.5
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.0e-23 113.2 80 63.8
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.0e-23 113.2 83 59.0
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.4e-23 112.8 81 58.0
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.8e-23 112.5 90 55.6
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.8e-23 112.5 84 59.5
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-23 112.1 84 56.0
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.3e-23 112.1 83 54.2
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 3.0e-23 111.7 92 54.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 5.2e-23 110.9 96 57.3
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 6.8e-23 110.5 80 60.0
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 8.8e-23 110.2 81 63.0
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 8.8e-23 110.2 83 57.8
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 8.8e-23 110.2 92 55.4
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.2e-22 109.8 74 63.5
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.2e-22 109.8 77 61.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.5e-22 109.4 88 55.7
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.0e-22 109.0 89 55.1
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.6e-22 108.6 79 62.0
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 2.6e-22 108.6 79 62.0
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 2.6e-22 108.6 81 53.1
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 2.6e-22 108.6 90 53.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.4e-22 108.2 78 52.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.4e-22 108.2 79 62.0
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 4.4e-22 107.8 78 57.7
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 5.7e-22 107.5 79 57.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 9.8e-22 106.7 75 65.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.3e-21 106.3 85 57.6
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.7e-21 105.9 78 56.4
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.8e-21 105.1 84 51.2
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 4.8e-21 104.4 84 58.3
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.8e-21 104.4 79 53.2
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 6.3e-21 104.0 79 53.2
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.3e-21 104.0 79 53.2
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 6.3e-21 104.0 79 53.2
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-20 103.2 82 56.1
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-20 103.2 82 56.1
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 1.4e-20 102.8 78 48.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-20 102.8 77 58.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-20 102.8 83 51.8
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 1.8e-20 102.4 82 58.5
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 1.8e-20 102.4 84 53.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 3.1e-20 101.7 75 60.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 4.1e-20 101.3 61 70.5
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 4.1e-20 101.3 84 52.4
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 9.1e-20 100.1 64 56.2
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.2e-19 99.8 78 48.7
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.2e-19 99.8 78 48.7
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.2e-19 99.8 78 48.7
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.6e-19 99.4 77 58.4
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.6e-19 99.4 79 50.6
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 1.6e-19 99.4 80 55.0
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.0e-19 99.0 83 54.2
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.7e-19 98.6 78 48.7
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.7e-19 98.6 84 52.4
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.5e-19 98.2 78 47.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 5.9e-19 97.4 80 55.0
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 5.9e-19 97.4 76 53.9
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.0e-18 96.7 79 54.4
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.0e-18 96.7 75 54.7
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.3e-18 96.3 78 52.6
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.3e-18 96.3 78 52.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.7e-18 95.9 81 49.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.2e-18 95.5 72 59.7
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 6.5e-18 94.0 92 46.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.5e-17 92.8 68 58.8
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 2.5e-17 92.0 66 60.6
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.5e-17 92.0 66 60.6
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 2.5e-17 92.0 73 56.2
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 4.2e-17 91.3 91 50.5
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 5.5e-17 90.9 70 54.3
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.6e-16 89.4 75 54.7
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.1e-16 89.0 73 54.8
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 3.6e-16 88.2 79 45.6
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 3.6e-16 88.2 64 53.1
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 8.0e-16 87.0 65 53.8
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 2.3e-15 85.5 76 51.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 6.8e-15 84.0 70 50.0
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 8.8e-15 83.6 69 50.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.4e-14 81.6 49 61.2
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 4.4e-14 81.3 62 51.6
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 9.8e-14 80.1 75 42.7
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.7e-13 78.2 79 48.1
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.7e-13 78.2 75 45.3
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.1e-12 76.6 74 48.6
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.4e-12 76.3 81 45.7
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.4e-12 76.3 73 46.6
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.4e-12 76.3 86 44.2
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.8e-12 75.9 76 46.1
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 1.6e-11 72.8 75 46.7
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.3e-10 69.7 90 41.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 1.3e-10 69.7 53 56.6
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 2.3e-10 68.9 73 45.2
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.3e-10 68.9 80 43.8
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.8e-10 68.2 64 50.0
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 5.0e-10 67.8 68 48.5
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 5.0e-10 67.8 60 46.7
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 8.6e-10 67.0 79 44.3
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 8.6e-10 67.0 73 35.6
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.5e-09 66.2 68 47.1
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-09 66.2 68 47.1
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.5e-09 66.2 68 47.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.5e-09 66.2 67 41.8
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.9e-09 65.9 67 47.8
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 3.3e-09 65.1 67 44.8
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 7.3e-09 63.9 79 41.8
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.5e-09 63.5 53 52.8
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.6e-08 62.8 74 43.2
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.8e-08 62.0 78 30.8
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.8e-07 59.3 78 41.0
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 5.7e-06 54.3 70 42.9


User provided reference genes

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