Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.3e-180 636.3 329 100.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 2.2e-172 609.0 329 93.9
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 7.6e-117 424.5 367 65.7
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 2.4e-102 376.3 337 60.8
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.1e-99 367.5 327 63.9
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 2.6e-93 346.3 321 59.2
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.0e-84 317.8 321 49.5
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.3e-84 317.4 334 50.0
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.9e-84 316.2 334 54.8
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 2.9e-84 316.2 322 49.7
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 8.4e-84 314.7 332 48.5
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 8.4e-84 314.7 332 48.5
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 7.1e-83 311.6 335 49.0
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.6e-82 310.5 332 53.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 2.1e-82 310.1 328 51.5
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 2.1e-82 310.1 327 50.2
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 4.6e-82 308.9 310 50.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 6.0e-82 308.5 331 49.8
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 1.0e-81 307.8 318 54.4
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.8e-81 307.0 336 50.0
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 3.0e-81 306.2 332 47.6
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 6.7e-81 305.1 341 51.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 8.7e-81 304.7 328 53.7
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 1.5e-80 303.9 330 51.5
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.9e-80 303.5 328 49.1
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 1.9e-80 303.5 330 48.2
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.3e-80 302.8 330 48.2
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 7.4e-80 301.6 336 48.2
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 9.7e-80 301.2 342 51.8
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 1.3e-79 300.8 339 47.5
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 2.8e-79 299.7 349 50.7
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 3.7e-79 299.3 329 53.5
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 3.7e-79 299.3 348 47.1
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 3.7e-79 299.3 340 47.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.1e-78 297.7 329 53.8
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.4e-78 297.4 347 46.1
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.8e-78 297.0 324 53.7
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 2.4e-78 296.6 326 53.4
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 2.4e-78 296.6 322 53.1
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 2.4e-78 296.6 312 52.2
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 4.1e-78 295.8 325 50.8
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.1e-78 295.8 379 45.4
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 6.9e-78 295.0 359 43.2
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 9.0e-78 294.7 316 47.8
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 9.0e-78 294.7 332 50.9
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.2e-77 294.3 336 50.0
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.6e-77 293.1 346 48.0
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 3.4e-77 292.7 334 50.9
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 3.4e-77 292.7 346 48.3
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 7.6e-77 291.6 369 46.6
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.0e-76 291.2 319 52.0
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.0e-76 291.2 339 49.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 1.0e-76 291.2 340 47.6
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 1.3e-76 290.8 331 51.4
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.3e-76 290.8 325 47.7
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.3e-76 290.8 329 50.5
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.8e-76 289.3 311 53.7
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 6.5e-76 288.5 325 52.3
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 6.5e-76 288.5 332 47.0
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.1e-75 287.7 324 51.9
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 3.2e-75 286.2 328 49.1
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 4.2e-75 285.8 328 51.2
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 5.5e-75 285.4 330 47.3
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.6e-74 283.9 344 45.3
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.8e-73 280.4 357 46.5
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.8e-73 280.4 324 48.5
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 8.8e-73 278.1 327 48.9
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 6.3e-71 271.9 329 49.8
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.8e-70 270.4 354 49.4
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 4.1e-70 269.2 325 50.8
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.2e-69 267.7 330 43.6
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 2.6e-69 266.5 342 48.2
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 3.8e-68 262.7 340 45.3
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 5.0e-68 262.3 329 45.3
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 6.5e-68 261.9 333 47.4
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.5e-67 260.0 304 46.1
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 3.2e-67 259.6 328 48.8
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.6e-66 257.3 341 42.2
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 6.1e-66 255.4 315 46.3
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-65 254.2 307 44.3
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 2.3e-65 253.4 277 47.7
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 6.7e-65 251.9 313 49.8
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 8.8e-65 251.5 326 42.0
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.5e-64 250.8 334 45.2
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 2.0e-64 250.4 334 45.2
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 4.4e-64 249.2 334 44.9
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 2.2e-63 246.9 357 42.0
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 8.2e-63 245.0 341 42.5
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 5.3e-62 242.3 328 44.2
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.3e-62 242.3 324 39.8
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 1.5e-61 240.7 342 43.3
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.5e-61 239.2 325 41.2
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 7.7e-61 238.4 333 44.7
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 1.7e-60 237.3 349 39.3
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 1.7e-60 237.3 349 39.5
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 1.7e-60 237.3 349 39.3
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 1.7e-60 237.3 349 39.3
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.9e-60 236.5 349 39.3
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.8e-60 236.1 342 40.6
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 3.8e-60 236.1 344 41.6
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 2.5e-59 233.4 344 41.0
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.4e-57 227.6 374 39.0
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 2.3e-57 226.9 328 39.6
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 5.2e-57 225.7 380 38.9
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 7.4e-56 221.9 262 49.6
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.6e-53 213.4 313 39.3
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 7.7e-53 211.8 315 44.4
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.5e-51 205.7 334 41.6
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 3.6e-50 203.0 326 36.8
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 1.0e-49 201.4 383 38.4
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.7e-47 194.1 327 39.8
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 3.8e-44 183.0 128 61.7
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.7e-39 167.5 326 32.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.4e-38 164.5 168 48.2
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 5.4e-38 162.5 237 38.8
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 9.5e-35 151.8 351 33.0
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.8e-33 147.5 166 48.8
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 1.8e-30 137.5 137 51.1
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.4e-30 137.1 306 31.4
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 3.1e-30 136.7 306 35.3
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 1.1e-27 128.3 158 45.6
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.5e-27 127.1 306 30.1
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.6e-26 124.4 320 30.0
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.0e-25 121.7 111 51.4
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.0e-20 102.8 219 41.1
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 8.0e-18 95.5 137 35.0
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-14 84.3 105 41.0
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 1.5e-08 64.7 58 55.2
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 1.3e-07 61.6 141 34.0
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 3.2e-06 57.0 54 51.9


User provided reference genes

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