Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.1e-306 1055.8 562 100.0
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.7e-302 1042.0 562 98.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 5.7e-274 947.2 562 89.0
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.9e-249 864.4 557 82.2
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 9.5e-245 850.1 563 79.4
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 4.9e-225 784.6 572 74.0
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.1e-204 716.1 554 67.7
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 4.1e-203 711.8 557 67.5
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.9e-203 711.1 559 67.4
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.6e-202 709.1 557 67.3
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 5.8e-202 708.0 555 67.6
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.3e-201 706.8 556 67.4
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 5.0e-201 704.9 557 68.2
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.3e-198 696.8 564 65.8
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.9e-197 693.0 538 69.5
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.9e-197 693.0 558 65.9
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 9.7e-197 690.6 564 66.5
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 2.2e-196 689.5 564 66.0
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 2.8e-196 689.1 542 66.6
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 2.4e-195 686.0 557 65.7
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.4e-195 686.0 569 65.6
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 5.3e-195 684.9 557 64.5
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-194 683.7 564 65.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 2.0e-194 682.9 559 65.5
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.6e-194 682.6 540 65.6
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 4.5e-194 681.8 555 65.6
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.0e-193 680.6 558 65.6
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.3e-193 680.2 564 66.1
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.3e-193 680.2 554 64.4
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.9e-193 679.1 557 67.1
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 3.8e-193 678.7 556 64.7
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 5.0e-193 678.3 566 63.8
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 1.1e-192 677.2 557 63.4
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.4e-192 676.8 557 65.4
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 2.5e-192 676.0 535 67.3
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.2e-192 675.2 557 65.9
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 4.6e-191 671.8 558 64.7
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 7.9e-191 671.0 587 61.2
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.0e-190 670.6 555 65.8
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.0e-190 670.6 558 63.1
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.0e-190 670.6 556 62.8
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 1.4e-190 670.2 556 64.0
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 6.7e-190 667.9 561 64.0
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.1e-189 667.2 552 64.3
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.5e-189 666.0 555 64.3
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 5.7e-189 664.8 556 62.8
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 5.7e-189 664.8 556 65.1
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 9.7e-189 664.1 555 65.0
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.3e-188 663.7 559 64.8
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 1.7e-188 663.3 556 64.4
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 2.8e-188 662.5 555 64.7
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 2.8e-188 662.5 558 62.9
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.4e-187 660.2 555 64.5
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.4e-187 659.4 555 64.7
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 2.4e-187 659.4 553 63.7
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 4.1e-187 658.7 553 63.5
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 5.3e-187 658.3 613 59.5
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.2e-186 657.1 549 64.5
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 4.5e-186 655.2 557 64.8
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.5e-186 655.2 557 64.8
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.5e-186 655.2 552 62.5
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 4.5e-186 655.2 552 62.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.0e-185 654.1 562 62.1
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.3e-185 653.7 582 60.8
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 1.3e-185 653.7 561 62.4
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.2e-185 652.9 556 62.6
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 2.9e-185 652.5 562 62.5
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.4e-184 650.2 564 61.3
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.2e-183 647.1 557 64.6
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.6e-183 646.7 555 62.3
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.1e-183 646.4 548 62.4
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.1e-183 646.4 557 64.5
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 3.6e-183 645.6 590 61.2
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 4.7e-183 645.2 561 61.9
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 7.9e-183 644.4 557 64.5
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 7.9e-183 644.4 561 63.5
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.0e-182 644.0 538 64.3
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.8e-182 643.3 538 64.3
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 3.0e-182 642.5 557 63.6
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 6.7e-182 641.3 538 64.3
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-181 639.4 579 60.4
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 8.2e-180 634.4 556 62.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 8.2e-180 634.4 556 62.8
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.4e-179 633.6 562 61.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 2.0e-178 629.8 556 62.8
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 5.5e-176 621.7 571 60.4
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 3.6e-175 619.0 573 60.6
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 4.7e-175 618.6 559 60.1
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 7.4e-173 611.3 568 60.2
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 8.2e-172 607.8 552 60.5
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.1e-171 607.4 566 58.3
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.5e-170 602.1 467 66.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 6.1e-167 591.7 459 65.8
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.1e-163 579.3 587 56.0
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.2e-162 577.4 563 56.3
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.9e-153 546.2 528 58.5
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.4e-141 506.1 607 48.6
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 9.2e-139 498.0 510 57.3
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.8e-134 483.8 403 64.8
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 2.9e-132 476.5 475 54.5
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 1.9e-128 463.8 474 54.2
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.5e-128 463.4 551 51.0
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 2.2e-116 423.7 364 62.9
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 7.8e-114 415.2 519 45.9
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 8.7e-113 411.8 364 61.5
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 8.7e-105 385.2 356 58.7
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 7.4e-104 382.1 356 58.1
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 7.4e-104 382.1 309 64.7
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 9.6e-104 381.7 276 69.2
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.6e-103 380.9 295 66.1
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 3.6e-103 379.8 348 59.5
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.1e-103 378.6 295 66.4
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 9.0e-102 375.2 309 63.8
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 6.0e-98 362.5 395 54.2
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 7.4e-96 355.5 383 50.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 4.0e-94 349.7 571 38.4
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 1.9e-88 330.9 551 37.4
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 2.6e-85 320.5 272 65.4
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 4.6e-82 309.7 260 63.1
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.1e-80 305.1 549 35.2
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 5.0e-60 236.5 165 72.1
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.3e-54 216.5 545 31.0
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 9.4e-51 205.7 280 47.5
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.5e-45 187.2 181 54.1
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 1.5e-43 181.8 183 56.3
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 2.9e-36 157.5 341 28.2
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 8.9e-33 146.0 447 26.2
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 8.3e-31 139.4 115 61.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 4.3e-27 127.1 437 28.1
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.8e-26 124.4 378 26.5
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.4e-25 122.1 351 26.8
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-22 112.5 170 43.5
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 4.1e-22 110.5 448 25.0
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.7e-21 107.8 91 59.3
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 2.7e-21 107.8 169 43.8
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 3.9e-20 104.0 515 24.7
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.9e-19 101.7 75 65.3
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 7.3e-19 99.8 155 40.0
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 6.2e-18 96.7 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.6e-10 70.9 260 28.1
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.1e-09 69.3 51 60.8
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 8.9e-09 66.2 457 23.0
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 1.5e-08 65.5 108 44.4
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 3.4e-08 64.3 229 25.8
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 1.3e-07 62.4 44 65.9
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 3.8e-07 60.8 339 23.0
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 1.4e-06 58.9 247 24.3
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 5.4e-06 57.0 229 24.9


User provided reference genes

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