Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 3.9e-70 268.1 140 100.0
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 1.9e-69 265.8 140 99.3
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.1e-56 223.4 140 84.3
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 1.2e-44 183.3 133 73.7
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 2.1e-44 182.6 133 73.7
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 7.6e-42 174.1 145 66.9
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 8.4e-41 170.6 146 61.6
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 1.9e-40 169.5 141 65.2
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 2.4e-40 169.1 139 65.5
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 2.1e-39 166.0 141 65.2
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 2.1e-39 166.0 145 64.8
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 2.7e-39 165.6 141 64.5
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 2.7e-39 165.6 140 65.0
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.7e-39 165.6 142 62.0
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.7e-39 165.6 142 62.0
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 3.5e-39 165.2 138 65.2
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 4.6e-39 164.9 148 63.5
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 6.0e-39 164.5 138 63.0
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.0e-38 163.7 135 64.4
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.3e-38 163.3 144 63.2
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.7e-38 162.9 141 62.4
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 1.7e-38 162.9 141 62.4
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 3.0e-38 162.2 141 64.5
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 3.9e-38 161.8 142 64.8
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 3.9e-38 161.8 138 63.8
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 5.1e-38 161.4 139 62.6
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 6.6e-38 161.0 138 64.5
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 6.6e-38 161.0 145 61.4
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 6.6e-38 161.0 148 60.8
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.9e-37 159.5 145 60.7
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 3.3e-37 158.7 137 63.5
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.3e-37 158.3 141 63.1
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 5.6e-37 157.9 137 63.5
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 7.3e-37 157.5 134 64.2
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 7.3e-37 157.5 134 60.4
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 7.3e-37 157.5 134 62.7
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.3e-36 156.8 142 62.0
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.3e-36 156.8 142 62.0
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.3e-36 156.8 151 61.6
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.3e-36 156.8 152 61.8
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 1.6e-36 156.4 134 61.2
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 1.6e-36 156.4 134 61.2
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.8e-36 155.6 141 62.4
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 2.8e-36 155.6 146 63.0
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 3.6e-36 155.2 134 61.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.6e-36 155.2 142 61.3
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 3.6e-36 155.2 142 59.2
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 4.8e-36 154.8 144 61.1
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 4.8e-36 154.8 134 61.2
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 4.8e-36 154.8 134 58.2
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 4.8e-36 154.8 137 60.6
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 6.2e-36 154.5 147 58.5
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 6.2e-36 154.5 151 60.3
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 1.1e-35 153.7 144 61.1
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 1.1e-35 153.7 141 59.6
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.4e-35 153.3 144 59.7
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 1.4e-35 153.3 146 61.6
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 1.8e-35 152.9 155 54.8
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 2.4e-35 152.5 126 67.5
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 2.4e-35 152.5 136 61.8
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 3.1e-35 152.1 134 59.0
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 6.9e-35 151.0 144 59.7
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 1.2e-34 150.2 151 56.3
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 1.2e-34 150.2 142 59.2
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.2e-34 150.2 136 61.0
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 1.5e-34 149.8 147 61.2
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 2.6e-34 149.1 136 59.6
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 3.4e-34 148.7 134 64.9
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.4e-34 148.7 134 64.9
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 3.4e-34 148.7 136 61.8
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 4.5e-34 148.3 136 60.3
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 5.8e-34 147.9 136 57.4
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 5.8e-34 147.9 138 61.6
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 9.9e-34 147.1 155 51.6
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.3e-33 146.7 123 64.2
Potri.009G136100 Populus trichocarpa HOM05D006047 ORTHO05D007353 1.7e-33 146.4 148 57.4
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 1.7e-33 146.4 134 59.7
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 1.7e-33 146.4 133 58.6
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.2e-33 146.0 151 55.0
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 2.2e-33 146.0 134 62.7
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 2.9e-33 145.6 145 59.3
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 4.9e-33 144.8 129 64.3
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 4.9e-33 144.8 135 56.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 6.4e-33 144.4 153 56.2
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 8.4e-33 144.1 133 63.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 1.1e-32 143.7 136 57.4
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.1e-32 143.7 151 57.0
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.4e-32 143.3 134 59.0
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.9e-32 142.9 123 65.0
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.7e-31 139.0 135 57.8
Zm00001eb331780 Zea mays HOM05D006047 ORTHO05D007353 1.8e-30 136.3 150 54.0
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 2.3e-30 136.0 130 60.8
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 1.5e-29 133.3 145 53.8
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 2.5e-29 132.5 132 55.3
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 2.5e-29 132.5 133 54.1
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 4.3e-29 131.7 133 54.1
Sabra09G0105700 Salix brachista HOM05D006047 ORTHO05D007353 4.3e-29 131.7 138 56.5
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 5.6e-29 131.3 133 55.6
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 1.6e-28 129.8 142 52.8
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 2.8e-28 129.0 133 53.4
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 3.6e-28 128.6 135 52.6
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 6.2e-28 127.9 136 55.1
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 1.4e-27 126.7 141 53.9
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 5.3e-27 124.8 131 56.5
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 6.9e-27 124.4 131 52.7
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 6.9e-27 124.4 131 52.7
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 6.9e-27 124.4 131 52.7
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 6.9e-27 124.4 131 52.7
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 9.0e-27 124.0 131 54.2
Zm00001eb103880 Zea mays HOM05D006047 ORTHO05D007353 4.5e-26 121.7 146 52.1
Nitab4.5_0000283g0480 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.4e-24 116.7 149 48.3
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 4.2e-24 115.2 141 48.2
Pp3c24_20200 Physcomitrium patens HOM05D006047 ORTHO05D007353 1.2e-23 113.6 134 47.8
MD05G1195600 Malus domestica HOM05D006047 ORTHO05D007353 1.3e-22 110.2 119 53.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 2.3e-22 109.4 129 48.8
Sopen11g011060 Solanum pennellii HOM05D011435 ORTHO05D012656 3.0e-22 109.0 126 53.2
SMO367G0473 Selaginella moellendorffii HOM05D006047 ORTHO05D007353 7.4e-21 104.4 146 45.9
CDE04G1108 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 8.1e-20 100.9 117 49.6
Nitab4.5_0003914g0120 Nicotiana tabacum HOM05D006047 ORTHO05D007353 1.4e-19 100.1 126 48.4
SEGI_27161 Sequoiadendron giganteum HOM05D006047 ORTHO05D007353 2.4e-19 99.4 115 48.7
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.6e-18 95.9 132 43.2
Sed0021144 Sechium edule HOM05D006047 ORTHO05D007353 3.5e-15 85.5 70 57.1
CAN.G588.87 Capsicum annuum HOM05D006047 ORTHO05D007353 6.0e-15 84.7 65 61.5
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 7.9e-15 84.3 133 40.6
Sed0002860 Sechium edule HOM05D006047 ORTHO05D007353 5.1e-14 81.6 58 67.2
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 9.0e-11 70.9 133 36.1
SalBow5G2603 Salvia bowleyana HOM05D006047 ORTHO05D007353 1.2e-10 70.5 100 41.0
TAR624G0128 Trochodendron aralioides HOM05D006047 ORTHO05D007353 2.9e-09 65.9 68 51.5
Zm00001eb046330 Zea mays HOM05D001486 ORTHO05D036446 2.9e-09 65.9 63 58.7
HPP92_025899 Vanilla planifolia HOM05D006047 ORTHO05D007353 4.2e-08 62.0 62 46.8
Zm00001eb181930 Zea mays HOM05D001107 ORTHO05D007353 1.3e-06 57.0 44 70.5
Cre01.g031250 Chlamydomonas reinhardtii HOM05D006047 ORTHO05D007353 2.3e-06 56.2 120 31.7
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 6.7e-06 54.7 132 31.1
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 6.7e-06 54.7 132 31.1
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 6.7e-06 54.7 132 31.1
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 6.7e-06 54.7 126 31.7
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 8.7e-06 54.3 132 31.1
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 8.7e-06 54.3 132 30.3


User provided reference genes

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