Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 9.5e-88 327.0 191 100.0
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 6.4e-84 314.3 190 95.8
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.0e-53 213.0 249 55.0
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 1.3e-52 210.3 197 64.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 7.9e-50 201.1 193 61.1
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 3.7e-47 192.2 141 75.2
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 7.4e-40 167.9 194 54.1
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 8.2e-39 164.5 193 52.3
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 1.2e-37 160.6 191 52.9
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 2.0e-37 159.8 191 50.8
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 2.0e-37 159.8 199 50.3
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.0e-37 159.8 193 52.8
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 2.6e-37 159.5 196 51.5
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 1.3e-36 157.1 193 51.3
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.9e-36 156.0 199 51.8
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.8e-36 155.6 199 51.8
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 3.8e-36 155.6 194 50.5
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 5.0e-36 155.2 189 49.2
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 5.0e-36 155.2 196 48.5
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 8.5e-36 154.5 196 49.5
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.4e-35 153.7 194 51.0
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 1.9e-35 153.3 191 51.8
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.2e-35 152.5 191 51.3
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 4.2e-35 152.1 192 50.0
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 7.2e-35 151.4 191 51.3
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 9.4e-35 151.0 193 50.8
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 9.4e-35 151.0 192 50.0
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.4e-35 151.0 195 53.3
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 1.2e-34 150.6 191 50.8
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.2e-34 150.6 190 46.8
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.6e-34 150.2 192 50.5
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 2.1e-34 149.8 186 49.5
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 2.7e-34 149.4 193 50.3
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 2.7e-34 149.4 182 51.6
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.7e-34 149.4 199 50.3
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.7e-34 149.4 193 52.8
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 3.6e-34 149.1 209 49.3
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 3.6e-34 149.1 193 52.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 3.6e-34 149.1 192 48.4
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 4.6e-34 148.7 191 50.3
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 4.6e-34 148.7 190 50.0
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 4.6e-34 148.7 190 50.0
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 6.1e-34 148.3 199 48.7
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 6.1e-34 148.3 193 50.3
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 1.0e-33 147.5 190 51.6
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 1.8e-33 146.7 195 54.9
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 2.3e-33 146.4 194 48.5
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 2.3e-33 146.4 192 48.4
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 6.7e-33 144.8 199 49.7
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.7e-33 144.8 199 49.7
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 6.7e-33 144.8 203 45.8
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 6.7e-33 144.8 182 50.0
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 1.1e-32 144.1 189 49.7
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 1.5e-32 143.7 193 47.2
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.5e-32 143.7 189 48.7
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 2.0e-32 143.3 197 49.2
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 2.6e-32 142.9 193 47.7
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 2.6e-32 142.9 190 47.4
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 3.3e-32 142.5 189 49.2
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 4.4e-32 142.1 188 46.8
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 7.4e-32 141.4 200 46.5
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 7.4e-32 141.4 191 47.6
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 9.7e-32 141.0 186 47.8
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.3e-31 140.6 193 53.4
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 2.2e-31 139.8 191 47.6
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 2.2e-31 139.8 190 47.9
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 4.8e-31 138.7 188 47.9
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 4.8e-31 138.7 190 45.8
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.2e-31 137.9 188 49.5
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 8.2e-31 137.9 186 46.8
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 1.1e-30 137.5 195 48.2
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.8e-30 136.7 188 46.3
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.4e-30 136.3 194 49.0
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 4.1e-30 135.6 188 44.7
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 4.1e-30 135.6 123 62.6
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 5.3e-30 135.2 186 47.3
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 6.9e-30 134.8 186 46.8
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 9.1e-30 134.4 188 44.7
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 9.1e-30 134.4 189 50.3
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 1.2e-29 134.0 194 46.4
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 1.5e-29 133.7 205 44.4
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 3.4e-29 132.5 194 47.9
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 3.4e-29 132.5 192 47.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 5.9e-29 131.7 191 45.0
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 7.7e-29 131.3 188 46.3
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 7.7e-29 131.3 188 46.3
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 7.7e-29 131.3 124 63.7
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 1.3e-28 130.6 188 43.1
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.3e-28 130.6 191 44.5
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 2.2e-28 129.8 188 44.1
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 2.2e-28 129.8 188 45.7
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 2.2e-28 129.8 188 44.7
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 5.0e-28 128.6 191 44.0
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.0e-28 128.6 204 49.0
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 6.5e-28 128.3 202 50.0
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.9e-27 126.7 188 43.1
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.9e-27 126.7 188 43.1
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.5e-27 126.3 192 43.8
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.7e-26 122.9 188 42.6
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 3.6e-26 122.5 127 54.3
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 6.1e-26 121.7 190 46.8
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.0e-25 120.9 194 41.2
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 1.0e-25 120.9 188 51.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.0e-25 119.4 137 54.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 5.2e-25 118.6 237 38.0
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 6.7e-25 118.2 190 54.2
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.5e-24 117.1 202 41.6
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 9.7e-24 114.4 187 41.2
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.3e-23 114.0 136 52.2
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 8.2e-23 111.3 124 47.6
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.1e-22 110.9 157 45.9
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 5.9e-21 105.1 191 40.8
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 1.0e-20 104.4 162 43.8
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 1.3e-20 104.0 138 52.2
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 1.7e-20 103.6 135 54.1
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 8.5e-20 101.3 135 49.6
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.1e-19 100.9 132 50.0
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 1.9e-19 100.1 118 50.8
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 4.2e-19 99.0 124 52.4
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.0e-17 94.4 176 39.8
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.3e-15 87.4 94 52.1
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 6.3e-15 85.1 195 39.0
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 3.5e-13 79.3 89 50.6
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.9e-12 76.3 95 45.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 1.5e-11 73.9 126 42.9
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 2.7e-10 69.7 118 39.0
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 2.0e-08 63.5 81 48.1
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 7.5e-08 61.6 80 45.0
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 7.5e-08 61.6 80 45.0
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 2.8e-07 59.7 113 35.4
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 7.0e-06 55.1 143 33.6
Zm00001eb093520 Zea mays HOM05D005654 ORTHO05D006438 7.0e-06 55.1 44 61.4


User provided reference genes

Program Settings