Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-104 382.9 206 100.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.6e-96 356.3 209 94.3
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.3e-79 300.1 181 84.5
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 2.1e-77 292.7 201 78.1
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 6.3e-69 264.6 185 74.1
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 7.7e-67 257.7 187 72.7
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.1e-65 253.8 202 66.3
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.2e-65 252.3 182 72.0
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.5e-65 251.5 182 70.9
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 9.4e-65 250.8 182 70.9
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.1e-64 249.6 202 62.9
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 4.6e-64 248.4 203 64.5
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.0e-63 247.3 184 69.6
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 1.4e-63 246.9 204 64.7
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 6.7e-63 244.6 180 68.3
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 8.8e-63 244.2 183 68.3
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 1.5e-62 243.4 168 70.8
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.6e-62 242.7 165 70.9
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 3.3e-62 242.3 202 63.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.4e-62 241.1 189 66.1
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.4e-62 241.1 182 65.9
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 7.4e-62 241.1 190 65.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-61 240.4 189 66.1
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.2e-61 239.6 202 63.9
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.8e-61 239.2 202 61.9
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.7e-61 238.8 165 69.7
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.8e-61 238.4 178 65.7
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 6.3e-61 238.0 177 66.1
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-60 237.3 181 67.4
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.1e-60 237.3 177 66.1
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 1.1e-60 237.3 185 65.4
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.1e-60 237.3 202 62.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.1e-60 237.3 202 61.4
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.8e-60 236.5 202 60.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.4e-60 236.1 171 69.0
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.1e-60 235.7 171 69.6
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 3.1e-60 235.7 171 69.0
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.1e-60 235.7 166 72.9
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.1e-60 235.3 181 68.5
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.3e-60 235.0 165 69.7
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 9.1e-60 234.2 202 62.4
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 9.1e-60 234.2 181 62.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.2e-59 233.8 180 66.1
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 2.0e-59 233.0 198 58.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.0e-59 233.0 205 59.5
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.0e-59 233.0 197 64.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 4.5e-59 231.9 196 62.2
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 5.9e-59 231.5 168 68.5
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 7.7e-59 231.1 202 60.4
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.0e-58 230.7 182 62.6
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.7e-58 229.9 182 63.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 1.7e-58 229.9 206 58.7
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 2.2e-58 229.6 175 64.0
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 2.2e-58 229.6 182 62.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 2.9e-58 229.2 178 61.8
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.8e-58 228.8 189 64.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.8e-58 228.8 195 62.6
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 5.0e-58 228.4 181 61.9
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 5.0e-58 228.4 189 61.9
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 6.5e-58 228.0 197 59.4
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 8.5e-58 227.6 195 59.5
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 8.5e-58 227.6 192 59.9
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 170 64.7
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 1.1e-57 227.3 190 60.0
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 197 60.9
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 1.1e-57 227.3 188 61.2
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.4e-57 226.9 202 58.9
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.5e-57 226.1 202 57.9
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.5e-57 226.1 188 61.2
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.2e-57 225.7 194 60.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 7.2e-57 224.6 195 55.9
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 7.2e-57 224.6 171 62.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.6e-56 223.4 171 63.7
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.1e-56 223.0 179 62.6
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 2.1e-56 223.0 202 58.9
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.7e-56 222.6 186 60.2
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 4.7e-56 221.9 203 61.1
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 4.7e-56 221.9 188 59.0
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.7e-56 221.9 149 69.8
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 6.1e-56 221.5 188 60.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.4e-55 220.3 188 60.6
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.8e-55 219.9 170 65.3
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 1.8e-55 219.9 222 55.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 2.3e-55 219.5 179 61.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 2.3e-55 219.5 179 61.5
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 3.9e-55 218.8 171 63.7
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 3.9e-55 218.8 171 63.7
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 5.2e-55 218.4 171 63.7
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 5.2e-55 218.4 171 63.7
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.2e-55 218.4 200 58.0
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 5.2e-55 218.4 211 58.3
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 5.2e-55 218.4 180 61.1
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 6.7e-55 218.0 194 57.7
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 1.1e-54 217.2 172 62.2
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.5e-54 216.9 202 56.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.5e-54 216.9 169 63.9
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 5.7e-54 214.9 186 60.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 5.7e-54 214.9 169 63.9
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 7.4e-54 214.5 155 66.5
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.3e-53 213.8 186 60.2
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 1.3e-53 213.8 185 61.6
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.8e-53 212.6 177 59.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 4.8e-53 211.8 182 59.9
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.1e-52 210.7 210 56.2
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.1e-52 210.7 196 56.6
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.8e-52 209.9 172 62.8
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.8e-52 209.9 169 62.7
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.8e-52 209.9 180 60.0
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.4e-52 209.5 169 60.9
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 3.1e-52 209.1 155 64.5
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.3e-52 208.4 180 60.0
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.3e-52 208.4 180 60.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-51 206.1 165 61.8
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 4.5e-51 205.3 164 61.6
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.1e-49 200.7 167 62.9
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 7.2e-49 198.0 184 56.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 1.6e-48 196.8 202 56.4
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 2.1e-48 196.4 216 49.1
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.0e-47 192.6 186 54.3
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 5.2e-47 191.8 178 59.0
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 9.7e-46 187.6 164 61.0
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.2e-45 186.4 142 62.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.5e-43 178.7 177 55.4
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.9e-43 178.3 162 56.8
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 5.0e-42 175.3 179 52.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 2.5e-41 172.9 162 53.1
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 8.0e-40 167.9 167 53.9
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 8.0e-40 167.9 148 59.5
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.0e-39 167.5 205 46.3
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.3e-34 150.6 192 45.8
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.1e-33 147.5 192 45.3
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.6e-32 143.7 192 44.3
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.3e-31 139.8 90 73.3
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.2e-31 138.7 95 70.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 9.8e-30 134.4 125 56.8
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.3e-29 134.0 83 72.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.3e-29 131.7 95 66.3
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-28 131.0 98 68.4
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.1e-28 131.0 139 51.1
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-27 127.5 85 65.9
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.0e-27 126.7 100 64.0
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 4.3e-25 119.0 102 58.8
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.2e-24 117.5 97 57.7
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 2.8e-24 116.3 76 68.4
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 1.7e-21 107.1 86 67.4
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 4.7e-16 89.0 75 65.3
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-15 86.7 79 59.5
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.4e-14 82.4 138 38.4
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 5.8e-14 82.0 76 55.3
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.6e-11 73.9 138 33.3
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 4.6e-11 72.4 62 61.3
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 4.7e-08 62.4 60 61.7
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.3e-07 60.1 42 66.7
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 3.1e-07 59.7 60 60.0
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.2e-07 58.9 46 63.0
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-06 57.8 90 43.3
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.0e-06 57.0 44 56.8
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 5.8e-06 55.5 73 46.6


User provided reference genes

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