Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.0e-125 451.8 221 100.0
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 3.2e-95 352.1 221 76.0
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.9e-94 347.4 221 76.0
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-92 342.8 211 83.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.0e-81 306.2 216 69.4
AUR62012550 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-76 289.3 221 69.7
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.2e-75 284.3 176 77.3
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-72 277.3 218 66.1
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.2e-55 218.8 146 67.8
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.0e-54 214.5 148 73.0
AUR62014651 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.6e-46 189.1 100 90.0
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.1e-46 188.3 222 48.6
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.4e-42 176.4 99 89.9
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.4e-42 176.4 221 44.3
AUR62014648 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-41 174.1 221 48.4
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.3e-40 169.9 218 44.0
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.3e-40 169.9 218 44.5
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 3.8e-40 169.1 218 42.7
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-39 167.2 224 42.0
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.3e-39 166.0 219 42.9
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.1e-38 163.3 218 42.2
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.1e-38 163.3 221 42.1
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-38 163.3 217 42.9
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-37 160.2 219 40.6
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.0e-37 159.1 224 41.5
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 6.8e-37 158.3 221 41.6
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 7.5e-36 154.8 220 41.8
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 7.5e-36 154.8 220 41.8
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-35 153.3 180 46.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.9e-35 152.9 218 41.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 2.9e-35 152.9 219 40.6
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-35 152.9 221 41.6
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 3.7e-35 152.5 223 38.1
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-35 152.1 218 40.4
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 8.3e-35 151.4 219 41.1
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-34 151.0 218 40.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-34 150.2 221 39.8
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 9.2e-34 147.9 218 41.3
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-32 142.9 217 39.6
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-31 141.0 217 39.6
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.9e-31 140.2 221 38.9
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 3.3e-31 139.4 214 41.6
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.6e-31 138.7 216 37.0
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.6e-31 138.7 216 37.5
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.1e-30 136.7 221 37.6
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-30 136.3 221 38.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.1e-29 132.9 219 36.5
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 8.9e-29 131.3 213 35.2
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.9e-27 125.6 217 34.6
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-26 124.4 164 38.4
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 2.4e-26 123.2 219 34.7
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.1e-26 122.5 214 34.1
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 4.1e-26 122.5 179 39.1
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.0e-26 121.7 214 34.6
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.0e-26 121.7 148 41.9
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 6.0e-25 118.6 148 43.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 6.0e-25 118.6 148 43.9
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 7.8e-25 118.2 215 32.1
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.8e-25 118.2 221 33.9
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 2.3e-24 116.7 217 32.3
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 2.3e-24 116.7 217 32.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.3e-24 116.7 203 34.5
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 2.3e-24 116.7 216 34.7
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.9e-24 115.9 150 41.3
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 5.0e-24 115.5 217 32.3
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.0e-24 115.5 161 37.3
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 6.6e-24 115.2 214 34.1
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 2.5e-23 113.2 235 31.1
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.5e-23 111.3 169 37.9
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.6e-22 110.5 215 30.2
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.6e-22 110.5 216 30.1
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.1e-22 110.2 221 33.5
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 8.1e-22 108.2 167 38.9
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-21 107.8 129 41.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.4e-21 107.5 190 38.4
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-21 107.5 134 41.8
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-21 107.1 216 29.2
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.8e-21 107.1 209 33.0
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.8e-21 107.1 209 33.0
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.8e-21 107.1 215 30.7
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 2.3e-21 106.7 219 30.1
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 3.1e-21 106.3 216 28.2
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 3.1e-21 106.3 213 32.4
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 3.1e-21 106.3 215 31.2
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.0e-21 105.9 245 30.2
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.2e-21 105.5 129 40.3
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 5.2e-21 105.5 142 40.8
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.2e-21 105.5 142 40.8
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 8.9e-21 104.8 197 34.0
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-20 104.4 133 40.6
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-20 104.4 133 40.6
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-20 104.0 216 28.7
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.5e-20 104.0 214 31.3
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.5e-20 104.0 218 28.4
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-20 104.0 112 48.2
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 2.0e-20 103.6 195 33.3
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 4.4e-20 102.4 218 28.9
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.8e-20 101.3 201 33.3
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 9.8e-20 101.3 177 35.6
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 9.8e-20 101.3 134 39.6
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-19 100.9 134 39.6
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.7e-19 100.5 214 31.3
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 4.9e-19 99.0 134 38.8
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.1e-18 97.8 167 36.5
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.1e-18 97.8 167 36.5
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.9e-18 97.1 172 34.3
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-18 97.1 170 37.6
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.2e-18 96.3 199 34.2
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 7.1e-18 95.1 194 33.5
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 1.2e-17 94.4 199 31.7
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-17 94.0 175 30.9
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 6.0e-17 92.0 199 31.7
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-15 87.8 180 31.1
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.5e-15 86.7 111 39.6
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 1.2e-14 84.3 221 32.6
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.2e-14 84.3 222 30.6
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-14 82.4 133 38.3
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 6.2e-14 82.0 218 33.0
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-13 81.3 218 33.0
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.4e-13 80.9 125 37.6
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 3.1e-13 79.7 132 34.1
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-13 79.7 96 42.7
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 4.0e-13 79.3 216 30.1
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 8.9e-13 78.2 123 36.6
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 2.6e-12 76.6 221 28.1
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 2.6e-12 76.6 218 33.5
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 7.6e-12 75.1 176 26.7
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.6e-12 75.1 134 37.3
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 7.6e-12 75.1 113 38.9
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 1.7e-11 73.9 219 27.9
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 1.7e-11 73.9 197 27.4
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 2.2e-11 73.6 221 29.4
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-11 73.2 217 29.5
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.9e-11 72.4 113 39.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 6.4e-11 72.0 111 40.5
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 6.4e-11 72.0 171 32.2
Sc05g0005670 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.4e-11 72.0 80 47.5
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 1.4e-10 70.9 134 36.6
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.4e-10 70.1 220 27.7
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 3.2e-10 69.7 220 27.7
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.2e-10 68.2 222 29.7
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 3.5e-09 66.2 163 31.3
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 1.7e-08 63.9 169 29.6
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 3.9e-08 62.8 106 35.8
Sed0001119 Sechium edule HOM05D004865 ORTHO05D005949 6.2e-06 55.5 121 32.2


User provided reference genes

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