Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.9e-301 1038.5 568 100.0
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 3.6e-58 230.3 514 36.4
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.3e-55 221.9 507 36.5
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 8.6e-52 209.1 573 33.9
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 1.9e-46 191.4 572 32.2
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 2.9e-39 167.5 514 30.7
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.4e-38 165.2 627 27.1
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 2.1e-37 161.4 137 61.3
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 1.7e-36 158.3 264 40.9
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 8.7e-36 156.0 278 41.4
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 1.5e-35 155.2 692 26.0
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.5e-35 155.2 612 26.6
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 5.6e-35 153.3 213 42.3
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 2.1e-34 151.4 637 28.7
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 2.8e-34 151.0 262 41.2
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 2.8e-34 151.0 660 27.0
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 3.6e-34 150.6 175 50.9
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 8.1e-34 149.4 654 28.1
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 8.1e-34 149.4 173 49.1
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 1.1e-33 149.1 165 47.9
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 1.8e-33 148.3 195 44.1
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 3.1e-33 147.5 653 28.2
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 3.1e-33 147.5 592 33.1
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 3.1e-33 147.5 157 47.8
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 4.0e-33 147.1 165 50.3
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 4.0e-33 147.1 680 25.4
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 5.3e-33 146.7 164 46.3
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 6.9e-33 146.4 164 47.0
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 9.0e-33 146.0 287 36.6
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 9.0e-33 146.0 679 25.6
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 1.2e-32 145.6 678 25.5
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 2.0e-32 144.8 165 48.5
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 2.0e-32 144.8 260 41.2
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.6e-32 144.4 195 45.1
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.6e-32 144.4 195 44.1
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 2.6e-32 144.4 301 36.2
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.4e-32 144.1 172 48.3
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.4e-32 144.1 210 43.8
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 5.8e-32 143.3 167 49.7
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 9.9e-32 142.5 678 27.6
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 9.9e-32 142.5 282 37.6
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 1.3e-31 142.1 651 25.7
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.7e-31 141.7 275 38.5
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.2e-31 141.4 186 45.7
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 2.2e-31 141.4 214 44.4
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 2.9e-31 141.0 216 42.6
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 2.9e-31 141.0 208 43.3
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 3.8e-31 140.6 216 42.6
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 6.4e-31 139.8 172 47.7
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 6.4e-31 139.8 216 41.2
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 8.4e-31 139.4 157 47.1
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 1.1e-30 139.0 283 36.4
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 1.1e-30 139.0 688 25.4
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 1.4e-30 138.7 274 36.9
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 1.4e-30 138.7 278 38.1
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 1.4e-30 138.7 216 42.1
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.4e-30 138.7 286 35.7
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 1.9e-30 138.3 282 35.5
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.4e-30 137.9 195 43.6
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 5.4e-30 136.7 172 44.8
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 7.1e-30 136.3 267 37.8
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 7.1e-30 136.3 216 41.7
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 7.1e-30 136.3 603 26.7
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 1.2e-29 135.6 283 37.5
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 1.2e-29 135.6 278 37.8
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 1.6e-29 135.2 195 41.5
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 2.7e-29 134.4 239 41.4
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 3.5e-29 134.0 164 47.0
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 4.6e-29 133.7 220 38.2
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 4.6e-29 133.7 276 37.7
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 6.0e-29 133.3 185 45.9
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 7.9e-29 132.9 686 24.3
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 1.3e-28 132.1 162 44.4
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 3.0e-28 131.0 284 36.6
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.9e-28 130.6 195 43.1
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 3.9e-28 130.6 174 44.8
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 5.1e-28 130.2 274 36.9
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 5.1e-28 130.2 174 44.8
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 8.7e-28 129.4 270 35.9
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 2.5e-27 127.9 289 36.0
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 3.3e-27 127.5 287 34.8
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 3.3e-27 127.5 250 38.4
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 5.6e-27 126.7 228 36.8
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 5.6e-27 126.7 228 36.8
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 9.6e-27 125.9 228 36.8
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 9.6e-27 125.9 228 36.8
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 9.6e-27 125.9 259 36.7
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 9.6e-27 125.9 185 44.3
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 9.6e-27 125.9 180 44.4
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-26 125.6 240 37.5
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-26 125.6 228 36.8
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 2.1e-26 124.8 250 37.2
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 2.1e-26 124.8 260 36.5
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 2.1e-26 124.8 273 35.5
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 3.6e-26 124.0 254 37.4
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 4.8e-26 123.6 272 36.8
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 4.8e-26 123.6 248 39.5
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 6.2e-26 123.2 243 38.3
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 8.1e-26 122.9 225 36.9
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-25 122.5 254 37.4
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 1.1e-25 122.5 254 37.4
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 1.4e-25 122.1 590 25.4
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.4e-25 122.1 277 35.4
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 2.4e-25 121.3 241 39.8
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 3.1e-25 120.9 263 33.5
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 1.5e-24 118.6 153 43.1
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 1.5e-24 118.6 726 25.2
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 2.6e-24 117.9 158 42.4
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 3.4e-24 117.5 168 40.5
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 5.8e-24 116.7 278 34.2
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 7.6e-24 116.3 227 35.7
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 1.3e-23 115.5 624 26.4
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 3.8e-23 114.0 185 42.2
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.1e-22 112.5 225 34.2
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 1.1e-22 112.5 210 40.5
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 3.5e-21 107.5 164 40.2
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 3.5e-21 107.5 164 40.2
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 6.0e-21 106.7 195 36.4
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 2.3e-20 104.8 572 23.8
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 3.9e-20 104.0 185 38.4
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 8.7e-20 102.8 164 40.2
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 8.7e-20 102.8 192 37.0
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.1e-19 102.4 209 36.4
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 1.1e-19 102.4 209 36.4
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 1.1e-19 102.4 205 35.6
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 2.5e-19 101.3 125 43.2
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 2.5e-19 101.3 160 39.4
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 3.7e-18 97.4 190 36.3
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 4.8e-18 97.1 224 33.5
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 4.8e-18 97.1 107 44.9
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 9.0e-17 92.8 159 37.7
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 1.2e-16 92.4 243 32.5
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 1.2e-16 92.4 199 35.2
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 1.2e-16 92.4 161 35.4
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 1.5e-16 92.0 687 22.9
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 4.5e-16 90.5 191 33.5
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 4.5e-16 90.5 162 35.8
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 5.8e-16 90.1 193 36.3
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-15 88.6 250 32.4
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 8.4e-15 86.3 202 30.7
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 9.3e-14 82.8 108 46.3
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 1.8e-09 68.6 90 36.7
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 9.0e-09 66.2 57 43.9
PGSC0003DMG401026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 1.5e-08 65.5 53 43.4
Lj7A297T46 Lonicera japonica HOM05D004393 ORTHO05D004897 3.4e-08 64.3 111 29.7
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 5.8e-08 63.5 132 34.8
Peaxi162Scf00207g01618 Petunia axillaris HOM05D004393 ORTHO05D004897 3.8e-07 60.8 84 28.6
Sabra07G0062600 Salix brachista HOM05D004393 ORTHO05D004897 5.0e-07 60.5 61 41.0
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 1.1e-06 59.3 82 45.1


User provided reference genes

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