Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 3.9e-188 661.4 345 100.0
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 2.4e-174 615.5 387 85.8
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 3.6e-109 399.1 428 55.1
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 3.5e-96 355.9 440 50.5
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.0e-84 317.8 450 46.4
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 7.1e-49 198.7 439 36.4
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.1e-44 184.9 318 42.8
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.7e-42 177.6 318 41.8
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 6.0e-40 169.1 317 41.6
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 3.0e-39 166.8 315 39.4
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 5.1e-39 166.0 314 40.1
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 5.1e-39 166.0 308 39.9
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 2.5e-38 163.7 307 39.4
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.3e-38 163.3 318 39.0
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 7.3e-38 162.2 319 37.6
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.6e-37 161.0 315 38.7
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 2.8e-37 160.2 316 38.0
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 3.6e-37 159.8 322 38.5
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 3.6e-37 159.8 314 36.0
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 6.2e-37 159.1 308 39.0
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 8.1e-37 158.7 301 38.2
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.8e-36 157.5 317 39.4
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 9.0e-36 155.2 313 39.3
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 1.5e-35 154.5 315 40.6
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 2.0e-35 154.1 307 38.8
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 4.5e-35 152.9 313 36.7
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.9e-34 150.2 304 38.8
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 8.4e-34 148.7 316 37.7
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 1.4e-33 147.9 321 37.1
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 5.4e-33 146.0 305 38.4
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 5.4e-33 146.0 304 37.8
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 9.3e-33 145.2 308 38.0
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 9.3e-33 145.2 316 35.8
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-32 144.8 307 37.1
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.6e-32 144.4 348 35.1
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.6e-32 144.4 324 37.3
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 2.1e-32 144.1 300 37.3
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.7e-32 143.7 321 36.4
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 3.5e-32 143.3 321 36.4
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 6.0e-32 142.5 312 36.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 6.0e-32 142.5 307 36.8
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.0e-32 142.5 314 39.2
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 7.9e-32 142.1 294 37.4
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.0e-31 141.7 321 35.5
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 1.0e-31 141.7 316 38.0
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.3e-31 140.6 315 39.7
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 3.9e-31 139.8 303 35.6
Ah.14g088790 Amaranthus hybridus HOM05D003379 ORTHO05D003862 6.7e-31 139.0 191 49.2
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 6.7e-31 139.0 380 32.1
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 8.7e-31 138.7 262 38.2
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 8.7e-31 138.7 303 35.6
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 8.7e-31 138.7 331 33.8
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 1.1e-30 138.3 326 32.8
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 1.1e-30 138.3 389 33.7
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 1.5e-30 137.9 311 35.4
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.9e-30 137.5 319 37.0
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.5e-30 137.1 423 32.2
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.5e-30 137.1 310 37.4
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 4.3e-30 136.3 323 37.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 5.6e-30 136.0 316 36.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 5.6e-30 136.0 315 36.2
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 7.4e-30 135.6 316 36.1
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 9.6e-30 135.2 318 36.5
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 1.3e-29 134.8 308 34.7
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.6e-29 134.4 296 36.5
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 1.6e-29 134.4 318 36.2
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 2.8e-29 133.7 299 36.8
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.8e-29 133.7 312 37.2
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 3.7e-29 133.3 300 34.3
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 3.7e-29 133.3 324 35.5
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 1.4e-28 131.3 303 36.3
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 2.4e-28 130.6 305 37.0
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.4e-28 130.6 304 37.2
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.4e-28 130.6 316 36.1
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.1e-28 130.2 386 32.9
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 4.0e-28 129.8 315 35.9
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.3e-28 129.4 291 36.1
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 5.3e-28 129.4 313 36.4
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 5.3e-28 129.4 316 35.4
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 9.0e-28 128.6 303 37.0
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 1.2e-27 128.3 314 37.9
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 2.0e-27 127.5 324 33.0
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.6e-27 127.1 304 36.8
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 3.4e-27 126.7 308 33.8
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 4.5e-27 126.3 327 33.0
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 4.5e-27 126.3 316 36.1
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 5.8e-27 125.9 388 32.2
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 5.8e-27 125.9 310 35.5
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 5.8e-27 125.9 302 39.7
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 9.9e-27 125.2 322 35.7
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 1.3e-26 124.8 298 32.6
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 1.3e-26 124.8 329 34.3
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.2e-26 124.0 303 34.7
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 2.2e-26 124.0 307 36.2
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 3.8e-26 123.2 309 35.0
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 1.1e-25 121.7 315 33.7
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 2.4e-25 120.6 303 35.3
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 2.4e-25 120.6 350 31.7
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.2e-25 120.2 388 31.7
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 4.2e-25 119.8 311 34.4
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 4.2e-25 119.8 315 33.3
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 5.5e-25 119.4 306 35.0
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 7.1e-25 119.0 324 32.7
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 7.1e-25 119.0 307 35.8
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 9.3e-25 118.6 307 35.5
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.6e-24 117.9 315 34.6
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 2.1e-24 117.5 329 34.3
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 4.6e-24 116.3 298 36.6
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 6.0e-24 115.9 310 36.1
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 7.9e-24 115.5 306 33.3
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 7.9e-24 115.5 307 33.6
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-23 114.8 310 35.8
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.0e-23 113.6 307 34.2
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 3.9e-23 113.2 311 31.2
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 5.1e-23 112.8 231 38.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 6.7e-23 112.5 316 32.9
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 6.7e-23 112.5 302 35.1
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 6.7e-23 112.5 314 32.8
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 8.7e-23 112.1 310 34.8
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 8.7e-23 112.1 302 34.8
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.5e-22 110.5 304 34.2
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 2.5e-22 110.5 326 32.5
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 3.3e-22 110.2 291 34.7
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 3.3e-22 110.2 302 35.8
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 7.4e-22 109.0 337 33.5
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 9.6e-22 108.6 336 33.6
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 9.6e-22 108.6 313 30.4
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.1e-21 107.5 274 34.7
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 3.7e-21 106.7 342 32.5
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 4.8e-21 106.3 320 32.5
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 6.2e-21 105.9 306 32.4
Oeu027918.1 Olea europaea HOM05D003379 ORTHO05D003862 6.2e-21 105.9 300 33.7
Zm00001eb421370 Zea mays HOM05D003379 ORTHO05D003862 6.2e-21 105.9 319 32.0
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 8.2e-21 105.5 311 31.5
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 8.2e-21 105.5 244 36.1
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.8e-20 104.4 307 34.5
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 9.0e-20 102.1 306 30.4
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 9.0e-20 102.1 324 31.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 2.6e-19 100.5 235 36.2
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.6e-19 100.5 311 34.1
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 3.4e-19 100.1 333 31.8
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.4e-19 100.1 253 33.6
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 7.6e-19 99.0 298 30.9
Mapoly0001s0546 Marchantia polymorpha HOM05D003379 ORTHO05D003862 7.6e-19 99.0 385 27.5
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.7e-18 97.8 297 30.0
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 2.2e-18 97.4 304 32.9
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 2.9e-18 97.1 332 31.0
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 3.8e-18 96.7 249 37.8
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.5e-18 95.9 311 32.5
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 6.5e-18 95.9 316 30.4
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 8.4e-18 95.5 277 31.4
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 2.5e-17 94.0 338 29.3
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 4.2e-17 93.2 328 32.0
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 7.1e-17 92.4 296 31.4
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 2.7e-16 90.5 167 37.7
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 1.3e-15 88.2 321 28.3
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 3.0e-15 87.0 310 32.3
Nitab4.5_0001409g0240 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.0e-15 87.0 301 28.9
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 8.7e-15 85.5 374 28.3
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 9.7e-14 82.0 300 31.0
SMO117G0242 Selaginella moellendorffii HOM05D002493 ORTHO05D003175 1.6e-13 81.3 306 30.4
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 2.8e-13 80.5 298 29.2
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.8e-13 80.5 251 31.9
Nitab4.5_0007209g0030 Nicotiana tabacum HOM05D000225 ORTHO05D001595 3.7e-13 80.1 286 29.4
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 4.8e-13 79.7 202 35.1
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 1.1e-12 78.6 172 33.1
CAN.G1061.1 Capsicum annuum HOM05D003379 ORTHO05D003862 4.1e-12 76.6 295 28.8
PGSC0003DMG400021424 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.9e-10 70.5 300 29.0
AagrBONN_evm.TU.Sc2ySwM_369.605 Anthoceros agrestis HOM05D003379 ORTHO05D003862 2.1e-08 64.3 302 26.8
HanXRQChr17g0550921 Helianthus annuus HOM05D003379 ORTHO05D003862 3.6e-08 63.5 95 38.9


User provided reference genes

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