Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 0.0e+00 2245.3 1137 100.0
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 0.0e+00 2054.6 1139 92.2
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 0.0e+00 1535.4 1137 70.0
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 0.0e+00 1265.8 1146 59.7
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 5.8e-249 865.1 1142 44.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.2e-227 792.0 1166 41.1
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.0e-221 774.6 1168 41.5
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 1.8e-221 773.9 1169 41.2
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 5.7e-212 742.3 1161 39.0
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 2.4e-210 736.9 1172 38.6
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.5e-209 734.2 1172 38.3
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 1.7e-200 704.1 1162 38.0
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 3.6e-198 696.4 1171 37.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 1.8e-197 694.1 1171 39.5
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 2.3e-197 693.7 1169 37.2
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 3.7e-195 686.4 1176 37.6
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 1.3e-192 677.9 1154 36.9
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.2e-192 677.2 1141 37.9
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.4e-191 674.5 1178 36.9
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 1.4e-189 667.9 1163 37.4
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 5.2e-189 666.0 1174 36.5
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.3e-187 661.4 1154 36.1
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 1.7e-187 661.0 1178 36.3
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.7e-184 651.0 1166 36.0
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.2e-182 644.8 1183 35.7
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.1e-182 644.0 1180 35.3
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.4e-181 641.3 1181 35.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 1.8e-181 641.0 1174 36.7
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 4.0e-181 639.8 1144 36.7
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 2.2e-179 634.0 1161 35.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.1e-178 631.7 1169 35.8
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 1.1e-178 631.7 1213 35.1
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.4e-178 631.3 1209 35.0
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 2.0e-177 627.5 1170 35.7
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 2.9e-176 623.6 1160 35.1
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 2.5e-175 620.5 1156 35.6
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.2e-175 620.2 1173 36.5
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 4.7e-174 616.3 1173 35.5
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 2.0e-172 610.9 1176 34.4
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.0e-169 600.9 983 37.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.0e-169 600.9 1159 35.3
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.3e-168 598.2 1169 34.8
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 2.9e-168 597.0 1255 34.3
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 6.6e-168 595.9 1165 35.2
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 8.6e-168 595.5 1190 35.4
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 7.2e-167 592.4 1172 34.9
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.2e-166 591.7 1165 34.9
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 2.1e-166 590.9 1173 34.5
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 6.8e-165 585.9 1163 35.2
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 8.9e-165 585.5 1160 34.7
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.4e-164 583.6 1167 34.7
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 3.4e-164 583.6 1167 34.7
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.2e-163 580.9 1170 34.4
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.9e-163 579.7 1161 34.5
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 6.3e-163 579.3 1159 34.6
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.8e-162 577.8 1181 33.6
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.6e-161 574.7 1170 34.5
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 5.9e-161 572.8 1111 34.7
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.9e-159 567.8 1158 33.9
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 2.8e-158 563.9 1151 34.9
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.4e-157 561.6 1133 34.1
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 1.4e-157 561.6 1164 33.5
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 3.1e-157 560.5 996 35.6
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 2.0e-156 557.8 1157 32.8
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 3.4e-156 557.0 1163 33.7
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 4.4e-156 556.6 1163 33.2
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.4e-154 550.8 1162 33.2
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 7.8e-153 545.8 1169 32.8
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.0e-152 545.4 1162 32.5
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 3.0e-152 543.9 1173 33.4
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 3.0e-152 543.9 1027 35.4
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 3.9e-152 543.5 1158 31.9
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 8.6e-152 542.3 1167 33.1
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 7.3e-151 539.3 1166 32.6
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 9.5e-151 538.9 1166 32.6
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 3.1e-149 533.9 1098 33.2
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 6.8e-149 532.7 1155 31.9
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 2.9e-147 527.3 1152 32.8
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 2.3e-144 517.7 1207 32.1
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 3.9e-144 516.9 1161 32.6
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 6.8e-141 506.1 1146 32.6
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.5e-140 505.0 1167 32.0
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 2.6e-140 504.2 981 33.8
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.2e-139 501.1 1135 32.8
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 2.8e-134 484.2 944 34.1
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 8.4e-131 472.6 1129 32.4
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 4.2e-130 470.3 1211 30.4
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 1.3e-128 465.3 1102 31.6
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.3e-115 422.2 912 32.3
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 4.2e-114 417.2 1253 27.0
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 5.1e-112 410.2 907 32.4
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 7.6e-108 396.4 1233 28.1
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.7e-107 395.2 971 30.0
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.5e-95 355.5 889 29.9
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 6.7e-88 330.1 660 33.5
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 4.4e-79 300.8 794 29.7
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 4.8e-78 297.4 922 27.8
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 1.5e-74 285.8 428 40.9
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 2.3e-72 278.5 1291 23.9
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 3.5e-68 264.6 1272 24.1
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 3.1e-61 241.5 299 46.8
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.7e-60 238.4 299 46.8
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 5.9e-60 237.3 309 43.7
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 1.0e-59 236.5 299 46.2
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 3.8e-59 234.6 299 45.2
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.2e-58 231.5 436 33.9
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 2.1e-57 228.8 299 44.5
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 1.3e-54 219.5 235 48.1
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.3e-54 219.5 274 47.8
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 1.9e-50 205.7 299 41.5
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 8.0e-49 200.3 235 46.8
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 3.0e-48 198.4 306 40.8
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 2.6e-47 195.3 306 40.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.2e-44 186.4 420 31.9
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.3e-43 183.0 308 38.6
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 6.6e-43 180.6 361 34.3
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.2e-39 169.9 175 52.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.2e-39 169.9 183 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 4.4e-39 167.9 344 32.8
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 1.4e-37 162.9 815 24.5
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 4.6e-36 157.9 175 50.3
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.6e-33 149.4 174 50.0
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.2e-31 143.3 187 44.9
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 3.4e-31 141.7 178 46.6
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 4.9e-30 137.9 167 48.5
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.2e-29 135.2 508 24.4
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 3.0e-27 128.6 230 34.3
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 1.4e-24 119.8 385 25.2
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.2e-23 116.7 426 28.2
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.4e-23 114.8 290 28.3
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.4e-21 109.8 139 48.9
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 4.1e-21 108.2 282 29.1
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 8.9e-16 90.5 208 27.4
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 3.2e-13 82.0 108 45.4
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 6.6e-11 74.3 124 41.1
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.9e-10 72.8 125 40.0
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 2.1e-09 69.3 81 38.3
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 3.6e-09 68.6 215 26.5
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 4.8e-09 68.2 78 39.7
BcaC01g00655 Brassica carinata HOM05D004959 ORTHO05D005961 5.8e-07 61.2 127 32.3


User provided reference genes

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