Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62012126 Chenopodium quinoa HOM05D002238 ORTHO05D007272 1.1e-253 879.4 432 100.0
AUR62040710 Chenopodium quinoa HOM05D002238 ORTHO05D007272 4.3e-245 850.9 432 96.1
EL10Ac2g04715 Beta vulgaris HOM05D002238 ORTHO05D007272 3.5e-186 655.2 432 74.8
Ah.16g102520 Amaranthus hybridus HOM05D002238 ORTHO05D007272 1.7e-180 636.3 429 71.8
Sc11g0007780 Simmondsia chinensis HOM05D002238 ORTHO05D007272 1.6e-151 540.0 418 64.1
Dinv30168 Davidia involucrata HOM05D002238 ORTHO05D007272 2.4e-139 499.6 422 60.4
Haze_00046 Corylus avellana HOM05D002238 ORTHO05D007272 2.1e-138 496.5 425 57.4
QL09p012798 Quercus lobata HOM05D002238 ORTHO05D007272 1.0e-137 494.2 410 58.0
Prupe.1G474900 Prunus persica HOM05D002238 ORTHO05D007272 6.6e-137 491.5 429 56.4
TAR625G0243 Trochodendron aralioides HOM05D002238 ORTHO05D007272 3.3e-136 489.2 413 58.4
RcHm_v2.0_Chr6g0298391 Rosa chinensis HOM05D002238 ORTHO05D007272 2.8e-135 486.1 401 59.9
Rhsim09G0014000 Rhododendron simsii HOM05D002238 ORTHO05D007272 1.3e-132 477.2 424 56.1
Ciclev10010344m.g Citrus clementina HOM05D002238 ORTHO05D007272 3.8e-132 475.7 408 57.6
FAN24G3345 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.4e-131 473.8 399 58.1
MD08G1146200 Malus domestica HOM05D002238 ORTHO05D007272 1.9e-131 473.4 429 55.0
CiPaw.05G262300 Carya illinoinensis HOM05D002238 ORTHO05D007272 5.4e-131 471.9 411 57.2
FvH4_2g29530 Fragaria vesca HOM05D002238 ORTHO05D007272 5.4e-131 471.9 399 57.9
Rhsim02G0198300 Rhododendron simsii HOM05D002238 ORTHO05D007272 2.1e-130 469.9 426 55.2
Duzib168G0728 Durio zibethinus HOM05D002238 ORTHO05D007272 1.7e-129 466.8 406 57.4
FAN27G0629 Fragaria x ananassa HOM05D002238 ORTHO05D007272 2.3e-129 466.5 401 57.4
Rhsim02G0195500 Rhododendron simsii HOM05D002238 ORTHO05D007272 3.0e-129 466.1 426 54.9
Nn2g11964 Nelumbo nucifera HOM05D002238 ORTHO05D007272 3.9e-129 465.7 403 56.8
FAN20G0928 Fragaria x ananassa HOM05D002238 ORTHO05D007272 1.5e-128 463.8 401 57.1
Manes.16G120100 Manihot esculenta HOM05D002238 ORTHO05D007272 1.9e-128 463.4 396 58.3
CANSAT54G2252 Cannabis sativa HOM05D002238 ORTHO05D007272 2.5e-128 463.0 427 52.7
PGSC0003DMG400020787 Solanum tuberosum HOM05D002238 ORTHO05D007272 8.1e-127 458.0 391 57.3
COL.COLO4_00195 Corchorus olitorius HOM05D002238 ORTHO05D007272 1.4e-126 457.2 404 55.9
Actinidia13250 Actinidia chinensis HOM05D002238 ORTHO05D007272 3.1e-126 456.1 401 55.9
Aqoxy3G03159 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 1.2e-125 454.1 401 55.9
CSS0032500 Camellia sinensis var. sinensis HOM05D002238 ORTHO05D007272 2.2e-124 449.9 429 53.1
Sopen08g016790 Solanum pennellii HOM05D002238 ORTHO05D007272 2.9e-124 449.5 391 56.8
Gohir.D09G019000 Gossypium hirsutum HOM05D002238 ORTHO05D007272 4.9e-124 448.7 400 57.0
Nitab4.5_0004440g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 8.4e-124 448.0 391 57.5
Solyc08g061450.3 Solanum lycopersicum HOM05D002238 ORTHO05D007272 8.4e-124 448.0 391 57.0
Gohir.1Z049673 Gossypium hirsutum HOM05D002238 ORTHO05D007272 2.4e-123 446.4 400 56.8
Gohir.A09G019700 Gossypium hirsutum HOM05D002238 ORTHO05D007272 9.3e-123 444.5 400 56.0
Lj8C25T21 Lonicera japonica HOM05D002238 ORTHO05D007272 2.7e-122 443.0 401 55.6
Gorai.006G022700 Gossypium raimondii HOM05D002238 ORTHO05D007272 3.5e-122 442.6 400 56.8
Potri.006G251400 Populus trichocarpa HOM05D002238 ORTHO05D007272 4.6e-122 442.2 403 54.8
Peaxi162Scf00108g00063 Petunia axillaris HOM05D002238 ORTHO05D007272 7.8e-122 441.4 392 56.1
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 2.3e-121 439.9 376 57.7
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 4.3e-120 435.6 384 56.8
MBI04_g24206_MAGBIO Magnolia biondii HOM05D002238 ORTHO05D007272 2.1e-119 433.3 396 55.1
Cpa.g.sc533.2 Carica papaya HOM05D002238 ORTHO05D007272 6.2e-119 431.8 399 52.9
Cc08_g00970 Coffea canephora HOM05D002238 ORTHO05D007272 3.1e-118 429.5 408 53.2
Eucgr.C01786 Eucalyptus grandis HOM05D002238 ORTHO05D007272 6.9e-118 428.3 386 53.9
Peaxi162Scf00327g00039 Petunia axillaris HOM05D002238 ORTHO05D007272 6.9e-118 428.3 379 56.2
TWI32G0967 Tripterygium wilfordii HOM05D002238 ORTHO05D007272 9.0e-118 427.9 401 52.6
Nitab4.5_0009247g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.2e-117 427.6 367 59.1
DCAR_006233 Daucus carota HOM05D002238 ORTHO05D007272 2.4e-115 419.9 371 55.8
Lj5g0011751 Lotus japonicus HOM05D002238 ORTHO05D007272 9.3e-115 417.9 408 50.7
Ca_12577_v3 Cicer arietinum L. HOM05D002238 ORTHO05D007272 1.2e-114 417.5 408 51.2
Oeu034743.2 Olea europaea HOM05D002238 ORTHO05D007272 1.6e-114 417.2 387 54.5
Medtr1g031820 Medicago truncatula HOM05D002238 ORTHO05D001984 2.3e-113 413.3 383 52.2
Sed0000756 Sechium edule HOM05D002238 ORTHO05D007272 8.7e-113 411.4 389 53.7
ClCG05G017070 Citrullus lanatus HOM05D002238 ORTHO05D007272 5.6e-112 408.7 430 49.8
PGR042G2797 Punica granatum HOM05D002238 ORTHO05D007272 3.7e-111 406.0 380 51.6
arahy.Tifrunner.gnm1.ann1.U1RD55 Arachis hypogaea HOM05D002238 ORTHO05D007272 6.2e-111 405.2 402 51.0
TPR.G36878 Trifolium pratense HOM05D002238 ORTHO05D001984 4.0e-110 402.5 399 49.9
PSO349G0250 Papaver somniferum HOM05D002238 ORTHO05D007272 1.0e-108 397.9 377 52.8
Psat6g044800 Pisum sativum HOM05D002238 ORTHO05D001984 2.2e-108 396.7 407 48.9
C07p42320 Brassica napus HOM05D002238 ORTHO05D007272 4.9e-108 395.6 400 51.5
BolC7t44761H Brassica oleracea HOM05D002238 ORTHO05D007272 8.4e-108 394.8 400 51.5
Migut.A00055 Erythranthe guttata HOM05D002238 ORTHO05D007272 1.1e-107 394.4 391 50.9
Sabra06G0196500 Salix brachista HOM05D002238 ORTHO05D007272 1.4e-107 394.0 400 51.8
arahy.Tifrunner.gnm1.ann1.H3G4DQ Arachis hypogaea HOM05D002238 ORTHO05D007272 4.2e-107 392.5 385 51.9
arahy.Tifrunner.gnm1.ann1.V2KEMD Arachis hypogaea HOM05D002238 ORTHO05D007272 7.1e-107 391.7 384 51.6
Lalb_Chr25g0279781 Lupinus albus HOM05D002238 ORTHO05D007272 7.1e-107 391.7 408 50.0
arahy.Tifrunner.gnm1.ann1.TBR9XZ Arachis hypogaea HOM05D002238 ORTHO05D007272 9.3e-107 391.3 386 50.5
arahy.Tifrunner.gnm1.ann1.BAI8MS Arachis hypogaea HOM05D002238 ORTHO05D007272 1.6e-106 390.6 384 51.6
BolC2t12011H Brassica oleracea HOM05D002238 ORTHO05D007272 2.7e-106 389.8 387 52.2
Aa31LG11G4600 Aethionema arabicum HOM05D002238 ORTHO05D007272 3.5e-106 389.4 421 49.4
Thhalv10005310m.g Eutrema salsugineum HOM05D002238 ORTHO05D007272 3.5e-106 389.4 400 51.8
Glyma.05G173000 Glycine max HOM05D002238 ORTHO05D007272 3.5e-106 389.4 385 50.1
C02p59480 Brassica napus HOM05D002238 ORTHO05D007272 7.9e-106 388.3 387 51.7
AL6G37300 Arabidopsis lyrata HOM05D002238 ORTHO05D007272 2.3e-105 386.7 399 51.4
Sp2g22030 Schrenkiella parvula HOM05D002238 ORTHO05D007272 3.0e-105 386.3 399 50.9
THA.LOC104810431 Tarenaya hassleriana HOM05D002238 ORTHO05D007272 3.9e-105 386.0 392 49.0
AT5G25500 Arabidopsis thaliana HOM05D002238 ORTHO05D007272 5.1e-105 385.6 399 51.1
arahy.Tifrunner.gnm1.ann1.NZP3ZD Arachis hypogaea HOM05D002238 ORTHO05D007272 8.7e-105 384.8 381 51.2
PSO017G3814 Papaver somniferum HOM05D002238 ORTHO05D007272 8.7e-105 384.8 380 51.6
CsaV3_3G046550 Cucumis sativus L. HOM05D002238 ORTHO05D007272 1.5e-104 384.0 387 50.4
VMungo1215G1712 Vigna mungo HOM05D002238 ORTHO05D007272 1.9e-104 383.6 387 49.1
Carub.0006s2336 Capsella rubella HOM05D002238 ORTHO05D007272 2.5e-104 383.3 403 49.6
CARHR187880 Cardamine hirsuta HOM05D002238 ORTHO05D007272 2.5e-104 383.3 399 50.4
A02p39700 Brassica napus HOM05D002238 ORTHO05D007272 2.8e-103 379.8 387 50.9
BraA02t08935Z Brassica rapa HOM05D002238 ORTHO05D007272 2.8e-103 379.8 387 50.9
MELO3C003684.2 Cucumis melo HOM05D002238 ORTHO05D007272 5.3e-102 375.6 390 49.0
Peaxi162Scf00002g00372 Petunia axillaris HOM05D002238 ORTHO05D003453 5.3e-102 375.6 362 55.0
arahy.Tifrunner.gnm1.ann1.Z0G856 Arachis hypogaea HOM05D002238 ORTHO05D007272 6.9e-102 375.2 374 51.6
Phvul.003G021200 Phaseolus vulgaris HOM05D002238 ORTHO05D007272 8.4e-100 368.2 413 45.5
Lsat_1_v5_gn_5_105001 Lactuca sativa HOM05D002238 ORTHO05D007272 9.3e-99 364.8 426 46.9
SGA_v2.0_scaffold20G09144 Striga asiatica HOM05D002238 ORTHO05D007272 1.2e-98 364.4 387 50.4
Peaxi162Scf00108g00056 Petunia axillaris HOM05D002238 ORTHO05D007272 2.7e-98 363.2 389 49.6
HPP92_000893 Vanilla planifolia HOM05D002238 ORTHO05D007272 1.5e-96 357.5 390 47.2
unitig_32.g11479 Utricularia gibba HOM05D002238 ORTHO05D007272 2.5e-96 356.7 381 47.2
GSVIVG01035523001 Vitis vinifera HOM05D002238 ORTHO05D007272 9.7e-96 354.8 388 50.8
BraA06t26543Z Brassica rapa HOM05D002238 ORTHO05D007272 5.1e-89 332.4 301 54.2
HanXRQChr13g0402681 Helianthus annuus HOM05D002238 ORTHO05D007272 1.5e-88 330.9 389 47.8
SHI18572 Sapria himalayana HOM05D002238 ORTHO05D007272 3.7e-87 326.2 391 45.0
Nitab4.5_0009119g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.6e-85 320.1 323 52.0
QL01p053808 Quercus lobata HOM05D002238 ORTHO05D007272 7.7e-85 318.5 253 61.3
Nitab4.5_0017994g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.9e-73 279.6 295 51.2
Peaxi162Scf00365g00022 Petunia axillaris HOM05D002238 ORTHO05D007272 6.7e-73 278.9 372 44.9
QL10p065634 Quercus lobata HOM05D002238 ORTHO05D007272 7.0e-70 268.9 253 53.0
Zm00001eb090760 Zea mays HOM05D002238 ORTHO05D007272 1.7e-68 264.2 405 39.8
Aqoxy5G03332 Aquilegia oxysepala HOM05D002238 ORTHO05D007272 5.0e-68 262.7 269 50.2
Os11g0207300 Oryza sativa ssp. japonica HOM05D002238 ORTHO05D007272 2.5e-67 260.4 408 38.7
MD15G1119600 Malus domestica HOM05D002238 ORTHO05D007272 1.6e-66 257.7 248 54.0
ATR1156G046 Amborella trichopoda HOM05D002238 ORTHO05D007272 8.8e-65 251.9 298 44.0
Atru.chr7.2387 Acer truncatum HOM05D002238 ORTHO05D007272 2.2e-63 247.3 174 65.5
SEGI_41370 Sequoiadendron giganteum HOM05D002238 ORTHO05D007272 2.2e-63 247.3 368 35.6
MD15G1122300 Malus domestica HOM05D002238 ORTHO05D007272 4.1e-62 243.0 268 50.4
Duzib187G0736 Durio zibethinus HOM05D002238 ORTHO05D007272 5.9e-61 239.2 208 56.7
ECA233G3411 Erigeron canadensis HOM05D002238 ORTHO05D007272 5.9e-61 239.2 233 49.4
Glyma.09G122801 Glycine max HOM05D002238 ORTHO05D007272 3.2e-59 233.4 196 54.6
Nitab4.5_0004440g0040 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.7e-56 222.6 169 62.7
Atru.chr7.2264 Acer truncatum HOM05D002238 ORTHO05D007272 5.4e-54 216.1 193 56.5
BcaNung07110 Brassica carinata HOM05D002238 ORTHO05D007272 1.7e-52 211.1 178 57.9
Peaxi162Scf00108g00048 Petunia axillaris HOM05D002238 ORTHO05D007272 1.5e-43 181.4 214 48.6
QL10p065406 Quercus lobata HOM05D002238 ORTHO05D007272 4.0e-41 173.3 253 38.7
Nitab4.5_0011728g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 6.8e-41 172.6 323 35.6
SalBow7G3196 Salvia bowleyana HOM05D002238 ORTHO05D007272 9.8e-40 168.7 187 46.0
Peaxi162Scf00015g02010 Petunia axillaris HOM05D002238 ORTHO05D004044 1.1e-38 165.2 193 48.2
SalBow6G2105 Salvia bowleyana HOM05D002238 ORTHO05D007272 4.1e-38 163.3 190 45.3
Nitab4.5_0013543g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.7e-37 160.6 136 59.6
BcaB07g29994 Brassica carinata HOM05D002238 ORTHO05D007272 4.6e-37 159.8 178 48.9
A06p36210 Brassica napus HOM05D002238 ORTHO05D007272 5.6e-35 152.9 162 50.0
Nitab4.5_0012587g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.3e-35 152.5 278 36.7
MD15G1118500 Malus domestica HOM05D002238 ORTHO05D007272 5.8e-32 142.9 120 52.5
Nitab4.5_0011591g0010 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.3e-28 131.0 111 60.4
Nitab4.5_0002007g0110 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-27 127.5 112 58.9
Nitab4.5_0002007g0090 Nicotiana tabacum HOM05D002238 ORTHO05D007272 1.3e-23 115.2 213 36.2
Nitab4.5_0011728g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 3.2e-22 110.5 116 48.3
Atru.chr7.2385 Acer truncatum HOM05D002238 ORTHO05D026268 2.1e-21 107.8 101 53.5
Nitab4.5_0012587g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 7.8e-21 105.9 116 46.6
Nitab4.5_0002007g0100 Nicotiana tabacum HOM05D002238 ORTHO05D007272 2.5e-11 74.3 87 44.8
Medtr3g118420 Medicago truncatula HOM05D002238 ORTHO05D026268 2.4e-09 67.8 86 41.9
Nitab4.5_0011591g0020 Nicotiana tabacum HOM05D002238 ORTHO05D007272 5.3e-09 66.6 71 43.7
Actinidia22361 Actinidia chinensis HOM05D002238 ORTHO05D055889 6.4e-07 59.7 53 50.9


User provided reference genes

Program Settings