Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.7e-132 476.1 252 100.0
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 8.6e-129 463.8 252 97.2
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 1.1e-104 383.6 252 79.8
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 2.1e-98 362.8 252 76.2
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 4.8e-71 271.9 248 61.7
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 1.4e-70 270.4 243 62.1
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 2.4e-70 269.6 251 61.4
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 6.9e-70 268.1 252 59.1
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 1.2e-69 267.3 249 57.8
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 4.5e-69 265.4 252 58.3
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 2.9e-68 262.7 250 61.2
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 2.9e-68 262.7 223 64.6
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 6.5e-68 261.5 253 59.7
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 1.9e-67 260.0 249 55.8
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 4.2e-67 258.8 252 58.3
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 9.4e-67 257.7 256 56.6
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 1.2e-66 257.3 267 54.7
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 1.2e-66 257.3 249 57.0
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 1.6e-66 256.9 263 58.9
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.7e-66 256.1 248 58.9
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 1.0e-65 254.2 252 56.3
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 1.4e-65 253.8 252 57.9
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 2.3e-65 253.1 249 55.4
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 3.9e-65 252.3 248 59.3
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 5.1e-65 251.9 249 58.2
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 5.1e-65 251.9 260 58.1
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 1.5e-64 250.4 248 58.9
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 2.0e-64 250.0 254 58.3
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 4.4e-64 248.8 252 56.3
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 4.4e-64 248.8 250 54.4
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 5.7e-64 248.4 249 53.8
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 5.7e-64 248.4 249 55.8
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 7.4e-64 248.1 250 53.6
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 9.7e-64 247.7 249 55.4
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.3e-63 247.3 252 58.3
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 1.7e-63 246.9 241 59.3
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 2.8e-63 246.1 249 55.4
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 3.7e-63 245.7 249 55.0
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 1.1e-62 244.2 297 49.5
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 3.1e-62 242.7 251 55.8
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 7.0e-62 241.5 251 55.4
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 9.1e-62 241.1 249 53.4
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 1.2e-61 240.7 247 56.7
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 4.5e-61 238.8 256 57.4
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.5e-61 238.8 248 54.8
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 5.9e-61 238.4 247 55.9
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 5.9e-61 238.4 249 55.4
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 7.7e-61 238.0 253 53.4
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.7e-60 236.9 261 55.2
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 3.8e-60 235.7 252 54.4
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 1.1e-59 234.2 250 58.0
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 1.4e-59 233.8 254 53.9
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.9e-59 233.4 252 54.8
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 3.2e-59 232.6 254 53.1
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 3.2e-59 232.6 254 53.1
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 1.2e-58 230.7 253 56.1
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.2e-58 230.7 267 53.9
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 1.6e-58 230.3 253 54.9
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 1.8e-57 226.9 248 54.4
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 3.9e-57 225.7 250 52.8
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 6.7e-57 224.9 248 53.6
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 1.1e-56 224.2 264 50.8
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 4.4e-56 222.2 249 50.6
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 1.4e-54 217.2 248 52.4
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 9.1e-54 214.5 227 55.1
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.0e-53 213.4 237 50.6
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 3.5e-53 212.6 251 52.2
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 5.9e-53 211.8 224 54.9
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 6.5e-52 208.4 259 51.4
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 1.1e-51 207.6 216 56.5
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 1.9e-51 206.8 251 48.6
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 1.9e-51 206.8 213 55.9
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 7.2e-51 204.9 217 54.8
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 9.4e-51 204.5 251 47.0
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 9.4e-51 204.5 216 54.6
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 3.6e-50 202.6 249 49.8
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 3.7e-47 192.6 232 50.0
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 3.1e-46 189.5 217 52.1
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 6.5e-44 181.8 247 46.2
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 6.5e-44 181.8 247 46.2
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 6.5e-44 181.8 247 46.2
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 8.5e-44 181.4 247 44.9
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 4.2e-43 179.1 247 44.1
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 5.5e-43 178.7 247 44.9
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 2.1e-42 176.8 247 44.5
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 6.1e-42 175.3 305 40.0
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 8.0e-42 174.9 247 44.5
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 1.0e-41 174.5 196 53.6
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 1.8e-41 173.7 247 42.9
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 8.8e-41 171.4 247 43.3
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 2.6e-40 169.9 192 52.6
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 2.8e-39 166.4 247 42.1
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 2.8e-39 166.4 277 42.6
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 2.8e-39 166.4 239 46.9
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 1.4e-38 164.1 267 40.1
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 4.1e-38 162.5 137 66.4
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.1e-38 162.5 122 73.0
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 4.1e-38 162.5 122 73.0
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 7.0e-38 161.8 247 40.9
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 7.0e-38 161.8 98 82.7
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 1.6e-37 160.6 224 48.2
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.0e-37 160.2 258 39.9
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 1.3e-36 157.5 105 76.2
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 3.8e-36 156.0 125 70.4
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 6.6e-36 155.2 260 41.5
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.1e-35 154.5 95 82.1
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 3.4e-32 142.9 111 66.7
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 3.7e-31 139.4 244 38.1
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 3.5e-29 132.9 183 49.2
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 4.5e-29 132.5 87 77.0
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 7.8e-29 131.7 243 38.7
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 7.3e-27 125.2 118 57.6
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 1.6e-26 124.0 258 35.7
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 3.6e-26 122.9 181 43.6
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 4.7e-26 122.5 181 43.6
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 6.1e-26 122.1 257 33.5
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 5.4e-22 109.0 97 61.9
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 2.0e-21 107.1 167 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 1.1e-19 101.3 234 34.2
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 5.6e-19 99.0 62 77.4
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 1.2e-18 97.8 189 38.6
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.1e-17 94.7 152 40.8
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 4.0e-17 92.8 58 77.6
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 1.2e-16 91.3 177 36.7
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.4e-16 89.7 179 36.9
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 5.8e-16 89.0 163 36.8
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.3e-15 87.8 66 66.7
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 8.3e-15 85.1 163 38.0
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.1e-14 84.7 163 37.4
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.1e-14 84.7 146 39.7
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 2.4e-14 83.6 48 83.3
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-12 77.8 194 33.5
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 3.9e-12 76.3 62 67.7
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 4.3e-11 72.8 223 30.9
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.8e-09 67.4 97 45.4
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.4e-06 57.8 39 61.5


User provided reference genes

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