Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.0e-260 902.9 453 100.0
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 2.5e-179 632.5 393 80.4
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.6e-178 629.8 393 80.4
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.4e-169 600.1 391 76.5
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 1.4e-169 600.1 430 70.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 3.4e-168 595.5 414 72.0
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 5.8e-168 594.7 405 71.6
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.6e-165 586.6 411 70.8
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.6e-165 586.6 411 70.8
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 3.5e-165 585.5 391 73.9
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 3.5e-165 585.5 391 73.7
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.6e-165 585.1 414 70.3
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 4.6e-165 585.1 409 70.4
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.0e-164 583.9 409 70.9
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.8e-164 583.2 390 73.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 1.8e-164 583.2 409 69.9
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.8e-164 583.2 391 73.7
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 6.7e-164 581.3 395 72.4
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.9e-163 579.7 408 70.1
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 5.6e-163 578.2 421 67.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 5.6e-163 578.2 408 69.1
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 2.1e-162 576.2 395 71.1
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.1e-162 576.2 391 71.6
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.1e-162 576.2 412 68.0
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 2.8e-162 575.9 394 71.3
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 2.8e-162 575.9 394 71.3
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 4.8e-162 575.1 409 69.2
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 1.1e-161 573.9 399 70.2
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.1e-161 573.9 421 66.0
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 1.1e-161 573.9 404 69.6
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.4e-161 573.5 409 69.2
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.8e-161 573.2 391 72.4
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.8e-161 573.2 390 71.8
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 2.4e-161 572.8 396 72.0
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.4e-161 572.8 426 67.4
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 3.1e-161 572.4 404 68.8
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 4.0e-161 572.0 399 69.7
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 4.0e-161 572.0 395 70.6
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 4.0e-161 572.0 398 70.1
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 5.3e-161 571.6 404 69.8
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 5.3e-161 571.6 391 70.6
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 9.0e-161 570.9 448 63.4
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 9.0e-161 570.9 392 70.9
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.5e-160 570.1 392 71.4
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.5e-160 570.1 391 71.1
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 2.6e-160 569.3 409 68.0
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 4.5e-160 568.5 397 69.5
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.5e-160 568.5 391 72.4
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 5.8e-160 568.2 391 70.6
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 9.9e-160 567.4 397 69.0
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.3e-159 567.0 390 71.5
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 2.9e-159 565.8 391 70.3
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.8e-159 565.5 409 67.7
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 3.8e-159 565.5 408 67.9
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 4.9e-159 565.1 406 68.2
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 4.9e-159 565.1 406 69.5
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 4.9e-159 565.1 391 70.6
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 4.9e-159 565.1 389 70.4
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 6.4e-159 564.7 397 70.3
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 8.4e-159 564.3 406 68.0
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 8.4e-159 564.3 417 65.9
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.4e-158 563.5 402 68.2
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.9e-158 563.1 391 69.6
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.4e-158 562.8 392 70.2
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 4.2e-158 562.0 390 69.5
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 4.2e-158 562.0 398 69.1
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 9.3e-158 560.8 400 70.5
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 9.3e-158 560.8 401 68.6
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.2e-157 560.5 406 67.7
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.6e-157 560.1 393 70.0
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.1e-157 559.7 401 67.8
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.0e-156 557.4 391 70.1
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.0e-156 557.4 393 70.0
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 1.3e-156 557.0 393 71.0
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.8e-156 556.6 389 69.2
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 3.0e-156 555.8 389 70.4
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 3.9e-156 555.4 411 65.9
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 6.7e-156 554.7 389 69.7
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.5e-155 553.5 391 68.8
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 2.5e-155 552.7 392 67.9
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 9.6e-155 550.8 404 68.6
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 9.6e-155 550.8 418 66.0
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 4.8e-154 548.5 390 68.7
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 6.2e-154 548.1 404 67.3
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 8.2e-154 547.7 389 68.4
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 8.2e-154 547.7 391 69.1
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.1e-153 547.4 387 68.7
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 1.1e-153 547.4 400 65.5
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 1.1e-153 547.4 389 67.9
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 1.4e-153 547.0 389 68.1
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 1.8e-153 546.6 420 65.5
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.1e-153 545.8 428 65.9
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 2.6e-152 542.7 391 68.5
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 1.7e-151 540.0 389 67.4
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 4.9e-151 538.5 381 70.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 5.5e-150 535.0 505 55.4
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 5.1e-148 528.5 408 64.2
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.1e-145 520.8 392 66.3
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-145 520.0 294 89.8
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 5.3e-145 518.5 523 52.6
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 2.2e-143 513.1 405 64.2
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 2.7e-141 506.1 410 62.2
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.3e-138 497.3 388 63.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 4.2e-134 482.3 352 66.8
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 9.4e-134 481.1 400 62.0
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.6e-133 479.2 261 87.0
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 7.9e-133 478.0 386 60.6
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 5.1e-132 475.3 388 61.1
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.1e-131 474.2 396 61.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.5e-131 473.8 386 60.6
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 5.7e-123 445.3 398 58.8
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 5.3e-121 438.7 321 68.8
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 2.0e-120 436.8 376 57.4
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 2.4e-113 413.3 354 60.7
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 7.0e-113 411.8 386 54.4
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.5e-112 409.5 354 60.2
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 2.9e-111 406.4 234 79.5
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 2.6e-107 393.3 448 50.2
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 3.6e-101 372.9 396 47.7
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 5.2e-100 369.0 410 50.5
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.0e-99 367.1 275 68.0
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.0e-97 358.6 400 50.2
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 2.5e-94 350.1 292 60.6
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 4.9e-90 335.9 386 46.1
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 4.6e-88 329.3 397 45.3
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.7e-82 310.8 301 56.1
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 3.2e-81 306.6 237 67.1
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.7e-80 303.5 251 62.5
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 5.2e-76 289.3 173 76.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 3.4e-75 286.6 219 67.1
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 1.6e-53 214.5 201 58.2
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.4e-52 211.5 202 55.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 9.3e-49 198.7 114 77.2
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 1.2e-48 198.4 115 74.8
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.5e-41 174.1 231 44.2
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.2e-40 171.8 94 87.2
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 6.0e-40 169.5 301 40.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-32 145.2 88 76.1
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.6e-32 143.3 404 29.2
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 5.1e-23 113.2 81 69.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.0e-22 111.3 99 57.6
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.5e-22 110.9 179 43.0
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.9e-18 97.4 85 58.8
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 8.5e-18 95.9 57 78.9
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.5e-11 75.1 45 77.8
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.3e-10 72.0 42 71.4


User provided reference genes

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