Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.2e-94 347.1 176 100.0
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.5e-84 315.1 188 86.7
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.6e-81 306.2 170 88.2
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 2.1e-81 305.8 173 86.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.1e-73 277.7 177 79.7
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 6.5e-67 257.7 153 80.4
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 1.6e-65 253.1 170 72.9
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.1e-65 251.1 170 75.3
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.0e-64 250.4 170 73.5
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.4e-64 250.0 171 72.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 1.8e-64 249.6 170 73.5
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.8e-64 249.6 170 74.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 2.3e-64 249.2 172 72.1
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 2.3e-64 249.2 171 72.5
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 5.2e-64 248.1 170 72.4
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 5.2e-64 248.1 169 73.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.8e-64 247.7 172 71.5
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-63 246.5 172 70.3
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 2.0e-63 246.1 170 74.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-63 246.1 167 72.5
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 2.0e-63 246.1 170 72.4
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 2.0e-63 246.1 170 71.2
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.0e-63 246.1 169 72.8
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.4e-63 245.0 170 71.8
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 4.4e-63 245.0 170 71.2
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 4.4e-63 245.0 170 71.2
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.7e-63 244.6 171 71.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.7e-63 244.6 170 73.5
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 5.7e-63 244.6 170 70.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.5e-63 244.2 171 70.2
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 9.8e-63 243.8 173 68.8
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.3e-62 243.4 170 72.9
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.3e-62 243.4 168 70.2
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.7e-62 243.0 167 71.3
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.7e-62 243.0 167 71.3
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.7e-62 243.0 171 70.2
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 2.2e-62 242.7 167 71.9
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.2e-62 242.7 170 70.0
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.2e-62 242.7 169 71.6
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 2.8e-62 242.3 170 70.0
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.7e-62 241.9 168 70.2
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 6.3e-62 241.1 163 74.2
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.3e-62 241.1 167 71.3
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 6.3e-62 241.1 170 69.4
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 8.3e-62 240.7 167 71.9
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 8.3e-62 240.7 170 71.2
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.1e-61 240.4 168 72.6
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.1e-61 240.4 168 67.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-61 240.4 171 69.6
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.1e-61 240.4 170 68.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.1e-61 240.4 170 68.2
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.4e-61 240.0 171 71.9
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.8e-61 239.6 168 69.0
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 2.4e-61 239.2 173 67.6
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 2.4e-61 239.2 171 69.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 4.1e-61 238.4 169 68.6
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.4e-61 238.0 169 69.2
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.4e-61 238.0 167 70.7
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 7.0e-61 237.7 171 69.6
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 7.0e-61 237.7 170 70.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 9.2e-61 237.3 171 68.4
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.7e-60 235.7 167 69.5
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 4.5e-60 235.0 171 69.0
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 5.9e-60 234.6 170 69.4
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.0e-59 233.8 170 68.8
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.0e-59 233.8 166 70.5
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.3e-59 233.4 170 69.4
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.7e-59 233.0 163 74.2
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 2.9e-59 232.3 171 67.3
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.8e-59 231.9 168 71.4
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 3.8e-59 231.9 170 68.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.8e-59 231.9 170 70.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 6.6e-59 231.1 170 64.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 6.6e-59 231.1 164 71.3
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 8.6e-59 230.7 168 66.7
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.5e-58 229.2 171 65.5
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 2.5e-58 229.2 170 70.6
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.3e-58 228.8 171 67.3
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 4.3e-58 228.4 170 67.1
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 4.3e-58 228.4 166 68.7
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 7.3e-58 227.6 169 66.3
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 9.5e-58 227.3 168 68.5
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.2e-57 226.9 170 67.6
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 1.6e-57 226.5 166 67.5
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 2.1e-57 226.1 169 65.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.1e-57 226.1 169 66.3
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.8e-57 225.7 166 72.3
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 4.7e-57 224.9 172 66.9
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 4.7e-57 224.9 162 68.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.7e-57 224.9 170 65.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.0e-56 223.8 168 66.7
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 3.0e-56 222.2 172 66.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 4.0e-56 221.9 164 67.1
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.2e-55 220.3 169 65.7
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.2e-55 220.3 169 65.7
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 1.5e-55 219.9 170 64.1
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.5e-55 219.9 171 64.9
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 2.6e-55 219.2 170 62.4
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 2.6e-55 219.2 143 76.2
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.4e-55 218.8 180 64.4
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 7.5e-55 217.6 171 63.2
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.7e-54 216.5 182 63.2
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-53 213.4 171 64.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 3.2e-53 212.2 169 64.5
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.0e-53 211.1 170 63.5
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.2e-52 210.3 145 71.7
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.3e-51 206.8 171 63.2
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.7e-51 206.5 172 62.8
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.1e-50 203.8 170 60.0
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.9e-50 203.0 167 64.1
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.2e-49 200.3 143 68.5
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.6e-49 199.9 156 62.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.1e-49 199.5 169 59.2
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.8e-49 199.1 167 63.5
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 4.7e-49 198.4 145 68.3
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.4e-48 196.8 158 65.8
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.8e-48 196.4 174 62.1
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 5.8e-47 191.4 166 56.0
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 7.5e-47 191.0 169 59.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.0e-43 180.6 133 66.2
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.0e-43 180.6 166 56.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.9e-42 176.4 170 57.1
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-40 170.2 116 72.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 2.3e-40 169.5 120 70.0
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 3.1e-40 169.1 116 69.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.2e-39 167.2 118 70.3
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 1.4e-37 160.2 169 49.7
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-36 157.1 133 59.4
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.5e-34 149.4 168 48.8
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.5e-34 149.4 169 50.3
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 4.0e-32 142.1 167 49.7
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 6.8e-32 141.4 166 48.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 4.9e-30 135.2 90 74.4
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 9.6e-18 94.4 118 45.8
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 1.3e-11 73.9 52 67.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 2.3e-11 73.2 58 56.9
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.5e-10 69.7 167 34.7
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 2.1e-09 66.6 56 58.9
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 2.1e-09 66.6 56 60.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 7.6e-07 58.2 171 30.4
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 9.9e-07 57.8 169 28.4
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.3e-06 57.4 184 26.6
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.3e-06 57.4 184 26.6
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.7e-06 57.0 172 29.1
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 2.9e-06 56.2 184 26.6
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 3.8e-06 55.8 184 26.1
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 3.8e-06 55.8 184 26.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 6.4e-06 55.1 172 28.5
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 8.4e-06 54.7 167 28.1


User provided reference genes

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