Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.6e-103 379.4 191 100.0
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 1.6e-71 273.1 150 87.3
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 2.8e-71 272.3 149 92.6
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 4.8e-71 271.6 150 87.3
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 2.4e-70 269.2 150 86.7
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 9.0e-70 267.3 150 86.0
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 1.2e-69 266.9 150 86.7
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.0e-69 266.2 150 85.3
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.0e-69 266.2 150 85.3
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 9.9e-69 263.8 150 84.0
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 9.9e-69 263.8 150 83.3
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.7e-68 263.1 150 84.7
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 2.2e-68 262.7 150 83.3
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 2.2e-68 262.7 149 83.2
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.9e-68 262.3 154 83.1
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 3.8e-68 261.9 150 82.7
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.8e-68 261.9 147 85.7
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 3.8e-68 261.9 157 81.5
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 84.0
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 4.9e-68 261.5 150 84.0
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.4e-68 261.2 150 83.3
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 8.4e-68 260.8 150 82.7
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 8.4e-68 260.8 150 83.3
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 8.4e-68 260.8 150 81.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 1.1e-67 260.4 150 80.7
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 1.4e-67 260.0 149 84.6
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-67 259.6 150 84.0
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 1.9e-67 259.6 150 82.7
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 1.9e-67 259.6 150 82.7
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 1.9e-67 259.6 150 80.7
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 2.4e-67 259.2 150 82.7
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.2e-67 258.8 150 82.7
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 3.2e-67 258.8 151 82.1
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 5.4e-67 258.1 150 82.7
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 5.4e-67 258.1 150 80.7
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 9.3e-67 257.3 150 82.7
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 1.2e-66 256.9 150 80.0
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.6e-66 256.5 151 82.8
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 1.6e-66 256.5 150 81.3
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 1.6e-66 256.5 153 80.4
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.6e-66 256.5 150 80.7
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 2.1e-66 256.1 150 80.0
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.7e-66 255.8 150 80.7
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 6.0e-66 254.6 152 80.3
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 6.0e-66 254.6 150 82.0
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 7.9e-66 254.2 147 83.0
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 7.9e-66 254.2 150 82.0
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 1.0e-65 253.8 150 80.7
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 1.0e-65 253.8 152 80.3
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 1.3e-65 253.4 150 80.0
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 1.8e-65 253.1 183 68.9
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 2.3e-65 252.7 145 83.4
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.3e-65 252.7 150 82.0
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 2.3e-65 252.7 150 80.7
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 3.0e-65 252.3 150 79.3
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 3.9e-65 251.9 150 79.3
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 5.1e-65 251.5 150 79.3
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 5.1e-65 251.5 150 81.3
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 6.7e-65 251.1 152 78.3
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.1e-64 250.4 145 81.4
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 1.5e-64 250.0 150 78.7
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-64 250.0 150 80.0
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 2.5e-64 249.2 151 80.8
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 2.5e-64 249.2 150 80.7
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 2.5e-64 249.2 150 76.0
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.3e-64 248.8 160 75.6
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 3.3e-64 248.8 150 80.0
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 4.3e-64 248.4 150 76.7
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 5.6e-64 248.1 153 79.1
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 9.6e-64 247.3 150 78.0
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 1.3e-63 246.9 150 78.0
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.3e-63 246.9 150 76.7
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 1.3e-63 246.9 150 74.7
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 2.1e-63 246.1 152 78.9
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.1e-63 246.1 152 78.9
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 2.1e-63 246.1 150 79.3
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 2.1e-63 246.1 150 78.7
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.8e-63 245.7 150 78.7
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 2.8e-63 245.7 150 77.3
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.8e-63 245.7 150 78.0
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.6e-63 245.4 150 78.0
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 3.6e-63 245.4 165 73.3
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 3.6e-63 245.4 155 76.8
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.2e-63 244.6 152 78.3
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.4e-62 243.4 150 76.7
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.8e-62 243.0 150 76.0
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.8e-62 243.0 150 79.3
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 5.3e-62 241.5 152 76.3
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 6.9e-62 241.1 152 78.3
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 6.9e-62 241.1 151 77.5
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 9.0e-62 240.7 150 75.3
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-61 240.0 150 78.7
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 2.0e-61 239.6 150 78.0
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.5e-61 238.4 150 78.0
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 5.8e-61 238.0 150 76.7
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 1.3e-60 236.9 150 76.0
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 1.7e-60 236.5 151 74.2
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 6.4e-60 234.6 150 76.7
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 6.4e-60 234.6 152 75.7
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 1.1e-59 233.8 150 76.0
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 4.2e-59 231.9 150 72.0
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 6.0e-58 228.0 150 69.3
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 1.8e-57 226.5 150 70.0
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 1.8e-57 226.5 147 76.2
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.8e-57 226.5 150 76.0
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 3.0e-57 225.7 150 70.0
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 5.1e-57 224.9 152 68.4
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 8.7e-57 224.2 150 70.0
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 1.1e-56 223.8 150 69.3
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 1.1e-56 223.8 150 68.7
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 1.5e-56 223.4 150 69.3
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.5e-56 222.6 150 68.7
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 2.5e-56 222.6 150 68.7
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 3.3e-56 222.2 150 70.0
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 5.6e-56 221.5 150 68.0
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 7.4e-56 221.1 150 69.3
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 1.4e-54 216.9 150 67.3
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 9.0e-54 214.2 145 71.7
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.6e-53 212.6 145 70.3
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 4.5e-53 211.8 168 61.3
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.5e-53 211.8 142 71.8
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 1.7e-52 209.9 153 62.7
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 2.9e-52 209.1 149 65.1
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.8e-52 208.8 149 67.1
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 3.8e-52 208.8 149 67.1
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 4.6e-50 201.8 119 79.8
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 2.3e-49 199.5 119 79.8
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.3e-49 199.5 153 64.7
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 8.7e-49 197.6 150 62.7
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 5.7e-48 194.9 117 80.3
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 5.9e-45 184.9 149 57.7
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 1.4e-43 180.3 108 75.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 2.5e-43 179.5 125 67.2
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 4.2e-43 178.7 108 75.0
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 1.5e-40 170.2 180 55.6
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.4e-38 163.7 159 49.7
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.1e-35 154.1 95 76.8
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.1e-30 134.4 100 67.0
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 2.6e-29 132.9 120 57.5
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 3.4e-29 132.5 72 83.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 3.4e-29 132.5 72 79.2
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.7e-28 130.2 144 48.6
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 2.9e-28 129.4 75 80.0
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.4e-25 120.6 75 76.0
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 6.7e-25 118.2 75 77.3
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.0e-24 116.7 75 74.7
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.7e-24 114.4 64 82.8
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 9.7e-24 114.4 64 82.8
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 3.7e-23 112.5 78 74.4
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.1e-22 110.9 89 64.0
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.4e-22 109.8 149 40.3
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 5.0e-12 75.5 48 81.2
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 4.4e-08 62.4 42 71.4


User provided reference genes

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