Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011343 Chenopodium quinoa HOM05D013587 ORTHO05D002252 8.9e-61 236.9 116 100.0
AUR62011345 Chenopodium quinoa HOM05D013587 ORTHO05D002252 8.9e-61 236.9 116 100.0
AUR62011347 Chenopodium quinoa HOM05D013587 ORTHO05D002252 7.8e-41 170.6 82 100.0
AUR62016714 Chenopodium quinoa HOM05D013587 ORTHO05D002252 1.5e-36 156.4 112 75.0
AUR62016715 Chenopodium quinoa HOM05D013587 ORTHO05D002252 3.3e-31 138.7 116 65.5
AUR62011348 Chenopodium quinoa HOM05D013587 ORTHO05D002252 5.6e-23 111.3 77 77.9
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 2.0e-20 102.8 97 55.7
EL10Ac4g09227 Beta vulgaris HOM05D037403 ORTHO05D002252 3.5e-17 92.0 114 46.5
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 9.6e-15 84.0 109 49.5
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 4.8e-14 81.6 91 50.5
Hund00283 Selenicereus undatus HOM05D013587 ORTHO05D002252 1.4e-13 80.1 91 49.5
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 3.8e-11 72.0 108 36.1
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 5.5e-10 68.2 90 41.1
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 7.2e-10 67.8 84 41.7
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.6e-09 66.6 90 40.0
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-09 66.6 77 44.2
MSTRG.20093 Avicennia marina HOM05D007227 ORTHO05D002252 2.7e-09 65.9 87 42.5
EL10Ac4g09226 Beta vulgaris HOM05D037403 ORTHO05D002252 2.7e-09 65.9 79 48.1
Ah.01g006200 Amaranthus hybridus HOM05D013587 ORTHO05D002252 3.5e-09 65.5 50 64.0
EL10Ac4g09228 Beta vulgaris HOM05D037403 ORTHO05D002252 3.5e-09 65.5 79 49.4
AUR62032492 Chenopodium quinoa HOM05D031247 ORTHO05D002252 3.5e-09 65.5 92 48.9
CANSAT56G4301 Cannabis sativa HOM05D007556 ORTHO05D002252 4.6e-09 65.1 94 41.5
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 4.6e-09 65.1 93 40.9
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 7.9e-09 64.3 81 39.5
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.9e-09 64.3 86 43.0
Lalb_Chr23g0265441 Lupinus albus HOM05D007227 ORTHO05D002252 1.0e-08 63.9 90 44.4
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.3e-08 63.5 99 36.4
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.8e-08 63.2 76 44.7
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 3.0e-08 62.4 74 44.6
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 3.0e-08 62.4 73 41.1
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.0e-08 62.4 92 38.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 3.0e-08 62.4 92 39.1
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 5.1e-08 61.6 98 41.8
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 5.1e-08 61.6 73 42.5
AUR62039400 Chenopodium quinoa HOM05D031247 ORTHO05D002252 6.7e-08 61.2 96 46.9
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 6.7e-08 61.2 81 37.0
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 8.7e-08 60.8 84 40.5
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 8.7e-08 60.8 93 43.0
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 1.5e-07 60.1 95 40.0
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.5e-07 60.1 67 43.3
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.5e-07 60.1 90 38.9
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.9e-07 59.7 85 37.6
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.9e-07 59.7 86 40.7
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 2.5e-07 59.3 95 38.9
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 3.3e-07 58.9 83 38.6
Sed0019925 Sechium edule HOM05D007227 ORTHO05D002252 4.3e-07 58.5 86 36.0
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 5.7e-07 58.2 95 37.9
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.7e-07 58.2 77 41.6
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 5.7e-07 58.2 75 40.0
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 5.7e-07 58.2 75 42.7
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 7.4e-07 57.8 86 40.7
Manes.07G098300 Manihot esculenta HOM05D007556 ORTHO05D002252 7.4e-07 57.8 80 37.5
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 9.7e-07 57.4 99 35.4
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 9.7e-07 57.4 107 37.4
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 9.7e-07 57.4 92 39.1
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 9.7e-07 57.4 96 35.4
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.7e-07 57.4 77 40.3
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 9.7e-07 57.4 88 35.2
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 9.7e-07 57.4 87 36.8
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 9.7e-07 57.4 97 33.0
Sc18g0004570 Simmondsia chinensis HOM05D013587 ORTHO05D002252 1.3e-06 57.0 75 44.0
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 1.6e-06 56.6 96 36.5
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.2e-06 56.2 85 36.5
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 2.2e-06 56.2 97 35.1
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 2.2e-06 56.2 82 34.1
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 2.2e-06 56.2 98 38.8
Ah.01g019500 Amaranthus hybridus HOM05D007227 ORTHO05D002252 2.8e-06 55.8 74 33.8
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.8e-06 55.8 82 40.2
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 2.8e-06 55.8 78 38.5
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.7e-06 55.5 86 31.4
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.7e-06 55.5 82 39.0
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 4.8e-06 55.1 81 38.3
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 4.8e-06 55.1 77 40.3
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 4.8e-06 55.1 83 37.3
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 4.8e-06 55.1 84 41.7
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 4.8e-06 55.1 104 36.5
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 6.3e-06 54.7 82 34.1
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 6.3e-06 54.7 77 41.6
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 6.3e-06 54.7 96 34.4
Glyma.11G119000 Glycine max HOM05D010359 ORTHO05D002252 8.2e-06 54.3 88 37.5
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 8.2e-06 54.3 98 37.8
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 8.2e-06 54.3 68 36.8
Lj9C368G9 Lonicera japonica HOM05D007227 ORTHO05D002252 8.2e-06 54.3 72 37.5
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 8.2e-06 54.3 99 38.4
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 8.2e-06 54.3 90 34.4
SalBow3G1687 Salvia bowleyana HOM05D007227 ORTHO05D002252 8.2e-06 54.3 70 40.0
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 8.2e-06 54.3 95 33.7


User provided reference genes

Program Settings