Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62011005 Chenopodium quinoa HOM05D007609 ORTHO05D009539 1.4e-47 192.6 93 100.0
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.0e-43 178.7 93 92.5
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 1.2e-14 83.2 96 49.0
EL10Ac8g18507 Beta vulgaris HOM05D007609 ORTHO05D009539 1.7e-10 69.3 68 55.9
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 2.3e-10 68.9 82 43.9
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 3.9e-10 68.2 83 39.8
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 1.5e-09 66.2 67 49.3
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 1.9e-09 65.9 81 42.0
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 7.3e-09 63.9 59 47.5
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 9.6e-09 63.5 65 46.2
TPR.G35275 Trifolium pratense HOM05D007609 ORTHO05D009539 1.3e-08 63.2 75 42.7
CiPaw.01G239000 Carya illinoinensis HOM05D007609 ORTHO05D009539 3.6e-08 61.6 57 47.4
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 3.6e-08 61.6 81 39.5
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 8.1e-08 60.5 62 46.8
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 1.4e-07 59.7 86 37.2
Medtr8g083460 Medicago truncatula HOM05D007609 ORTHO05D009539 1.4e-07 59.7 87 37.9
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 1.8e-07 59.3 25 84.0
Glyma.09G189800 Glycine max HOM05D007609 ORTHO05D009539 1.8e-07 59.3 82 41.5
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.8e-07 59.3 25 84.0
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.8e-07 59.3 25 84.0
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.8e-07 59.3 25 84.0
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.4e-07 58.9 25 84.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.4e-07 58.9 25 84.0
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 2.4e-07 58.9 57 49.1
Ca_25525_v3 Cicer arietinum L. HOM05D007609 ORTHO05D009539 3.1e-07 58.5 79 40.5
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 3.1e-07 58.5 81 39.5
HanXRQChr10g0317871 Helianthus annuus HOM05D007609 ORTHO05D009539 4.0e-07 58.2 75 41.3
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 4.0e-07 58.2 38 57.9
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 4.0e-07 58.2 81 38.3
Haze_25706 Corylus avellana HOM05D007609 ORTHO05D009539 5.3e-07 57.8 83 43.4
Peaxi162Scf00560g00120 Petunia axillaris HOM05D007609 ORTHO05D009539 5.3e-07 57.8 73 38.4
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 6.9e-07 57.4 60 45.0
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 6.9e-07 57.4 62 46.8
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 6.9e-07 57.4 26 76.9
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 6.9e-07 57.4 26 76.9
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 6.9e-07 57.4 25 84.0
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 6.9e-07 57.4 29 69.0
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 9.0e-07 57.0 87 35.6
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 9.0e-07 57.0 48 50.0
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 9.0e-07 57.0 27 74.1
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 9.0e-07 57.0 25 80.0
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 1.2e-06 56.6 26 76.9
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 1.2e-06 56.6 32 62.5
Phvul.004G162600 Phaseolus vulgaris HOM05D007609 ORTHO05D009539 1.5e-06 56.2 62 41.9
Prupe.7G229700 Prunus persica HOM05D007609 ORTHO05D009539 1.5e-06 56.2 23 91.3
Cfa003264 Carpinus fangiana HOM05D007609 ORTHO05D009539 2.0e-06 55.8 83 45.8
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 2.0e-06 55.8 25 80.0
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 2.0e-06 55.8 23 87.0
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 2.0e-06 55.8 43 51.2
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 2.6e-06 55.5 25 80.0
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.6e-06 55.5 25 80.0
Psat1g041120 Pisum sativum HOM05D007609 ORTHO05D009539 3.4e-06 55.1 77 44.2
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 3.4e-06 55.1 29 65.5
ATR0559G294 Amborella trichopoda HOM05D007609 ORTHO05D009539 4.4e-06 54.7 27 74.1
C06p13920 Brassica napus HOM05D010933 ORTHO05D013136 4.4e-06 54.7 53 41.5
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 4.4e-06 54.7 25 76.0
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 4.4e-06 54.7 23 82.6
VMungo0464G1934 Vigna mungo HOM05D007609 ORTHO05D009539 4.4e-06 54.7 42 50.0
COL.COLO4_34908 Corchorus olitorius HOM05D007609 ORTHO05D009539 5.8e-06 54.3 25 76.0
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 5.8e-06 54.3 31 64.5
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 5.8e-06 54.3 23 78.3
RcHm_v2.0_Chr2g0090641 Rosa chinensis HOM05D007609 ORTHO05D009539 5.8e-06 54.3 51 56.9
ECA232G3029 Erigeron canadensis HOM05D007609 ORTHO05D009539 7.6e-06 53.9 44 45.5
Lj2g0010717 Lotus japonicus HOM05D007609 ORTHO05D009539 7.6e-06 53.9 83 39.8
CsaV3_1G030560 Cucumis sativus L. HOM05D007609 ORTHO05D009539 9.9e-06 53.5 30 63.3
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 9.9e-06 53.5 23 82.6
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 9.9e-06 53.5 23 82.6
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 9.9e-06 53.5 26 69.2


User provided reference genes

Program Settings