Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 0.0e+00 1565.4 855 100.0
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 0.0e+00 1405.6 858 90.8
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 1.7e-293 1012.7 886 66.4
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.1e-210 736.1 863 53.1
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 6.6e-205 718.4 896 54.1
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 4.2e-143 513.1 915 41.2
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 3.0e-133 480.3 899 40.0
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 2.4e-114 417.5 892 35.8
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 1.5e-95 355.1 933 33.2
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 6.2e-86 323.2 941 31.9
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 7.8e-81 306.2 932 34.0
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.2e-76 292.4 925 28.9
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.4e-75 286.6 924 31.4
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.6e-73 282.0 910 30.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.5e-73 280.8 932 29.4
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.0e-72 279.3 931 30.3
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 5.6e-71 273.5 916 29.4
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 8.1e-70 269.6 917 29.2
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 5.8e-68 263.5 906 28.7
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 9.9e-68 262.7 952 27.9
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 4.9e-67 260.4 917 30.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.1e-66 259.2 920 32.1
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 7.1e-66 256.5 923 29.1
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 7.8e-65 253.1 908 28.5
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 3.9e-64 250.8 926 28.7
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.3e-63 247.3 912 28.3
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.6e-62 245.4 927 28.9
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 2.1e-62 245.0 965 27.5
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.6e-62 244.2 1041 26.3
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 1.4e-61 242.3 869 28.2
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 6.9e-61 240.0 908 28.0
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 6.9e-61 240.0 891 27.7
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.0e-60 238.4 922 26.6
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 8.4e-59 233.0 927 29.4
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 8.4e-59 233.0 918 27.7
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.4e-58 231.5 951 25.2
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 4.2e-58 230.7 892 26.9
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.5e-57 227.6 933 26.5
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 6.0e-57 226.9 941 27.7
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 8.7e-56 223.0 1045 26.2
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.9e-55 221.9 993 29.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 5.6e-55 220.3 929 29.0
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.6e-54 218.8 735 27.8
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.6e-54 217.6 860 27.7
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 6.2e-54 216.9 923 31.2
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 6.2e-54 216.9 923 27.0
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 1.8e-53 215.3 927 27.8
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.1e-53 214.5 859 27.7
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 4.0e-53 214.2 933 26.3
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 4.0e-53 214.2 563 31.8
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.5e-52 212.2 900 27.8
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.6e-52 211.5 954 30.2
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 4.5e-52 210.7 923 27.2
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 7.6e-52 209.9 877 27.4
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.9e-52 209.5 896 28.6
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 3.8e-51 207.6 897 26.9
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.1e-50 206.1 1076 25.2
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.4e-50 205.7 863 27.1
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.9e-50 205.3 907 27.2
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.2e-49 202.6 912 27.1
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.6e-49 202.2 1065 25.1
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 6.0e-49 200.3 862 27.0
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.0e-48 199.5 888 27.3
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.0e-48 199.5 1018 25.1
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 1.3e-48 199.1 950 27.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.8e-48 198.7 923 26.9
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.3e-48 198.4 923 28.5
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.3e-48 198.4 874 27.0
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 3.0e-48 198.0 918 28.0
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 6.7e-48 196.8 888 27.1
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 7.4e-47 193.4 885 27.3
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 1.1e-45 189.5 911 28.3
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 4.0e-45 187.6 993 26.9
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 5.3e-45 187.2 887 26.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 1.5e-44 185.7 893 27.3
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.0e-44 185.3 891 26.8
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 3.4e-44 184.5 972 26.7
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 6.7e-40 170.2 927 27.6
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 8.7e-40 169.9 922 28.1
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.5e-39 169.1 899 27.4
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 1.9e-39 168.7 977 25.0
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 4.3e-39 167.5 864 25.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.3e-38 166.0 889 25.9
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 8.2e-38 163.3 764 27.1
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 7.6e-36 156.8 328 41.5
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 2.2e-35 155.2 711 24.8
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 3.2e-34 151.4 864 24.9
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 5.1e-32 144.1 907 23.9
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 6.7e-32 143.7 902 23.3
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 3.3e-31 141.4 875 24.7
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 5.7e-31 140.6 902 24.3
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 5.7e-31 140.6 872 24.2
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 9.7e-31 139.8 883 24.1
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 4.8e-30 137.5 597 24.1
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 1.1e-29 136.3 746 24.8
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 6.9e-29 133.7 875 24.5
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 8.5e-27 126.7 879 23.9
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 2.5e-26 125.2 650 22.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 3.2e-26 124.8 702 22.9
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.2e-26 124.4 392 29.8
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 1.2e-25 122.9 874 24.6
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.5e-23 115.9 418 28.7
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 3.3e-23 114.8 884 24.1
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 3.3e-23 114.8 884 24.1
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 5.7e-23 114.0 414 28.7
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 6.9e-21 107.1 373 28.4
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.2e-20 106.3 238 31.1
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.2e-19 102.1 163 42.9
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.9e-19 101.7 198 30.8
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 5.0e-19 100.9 430 26.0
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 2.5e-18 98.6 887 23.0
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 1.2e-17 96.3 887 23.0
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 1.2e-17 96.3 894 22.5
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 2.1e-17 95.5 187 34.8
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 4.7e-17 94.4 887 22.7
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 7.9e-17 93.6 911 22.7
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 1.0e-16 93.2 885 25.0
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 1.8e-16 92.4 898 22.9
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.8e-16 92.4 164 40.2
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 8.8e-16 90.1 167 32.9
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 1.5e-15 89.4 884 23.4
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 2.6e-15 88.6 868 23.3
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 1.3e-14 86.3 879 22.5
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 1.1e-13 83.2 310 30.0
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 5.3e-13 80.9 894 22.5
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.5e-12 78.2 226 29.2
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 5.9e-12 77.4 271 23.2
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 5.0e-11 74.3 181 28.2
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 6.5e-11 73.9 236 25.4
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 8.5e-11 73.6 230 27.0
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.5e-10 72.8 319 24.5
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 2.5e-10 72.0 495 23.2
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 2.5e-10 72.0 177 28.2
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 4.2e-10 71.2 164 28.0
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.5e-10 70.9 164 28.0
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 5.5e-10 70.9 164 28.0
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 7.2e-10 70.5 181 27.6
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 3.6e-09 68.2 185 31.9
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 6.1e-09 67.4 236 24.6
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.1e-09 67.4 251 25.9
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 6.1e-09 67.4 316 27.5
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 8.0e-09 67.0 198 27.3
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.0e-08 66.6 246 25.6
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.0e-08 65.1 316 27.2
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 5.2e-08 64.3 170 27.1
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 5.2e-08 64.3 168 29.8
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 6.7e-08 63.9 311 26.4
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 6.7e-08 63.9 270 24.4
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.8e-08 63.5 169 25.4
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 1.1e-07 63.2 213 26.3
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 1.5e-07 62.8 169 27.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 5.7e-07 60.8 196 23.5
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.7e-07 60.8 800 21.6
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 5.7e-07 60.8 203 28.1
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 5.7e-07 60.8 168 28.0
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 7.5e-07 60.5 234 29.9
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 9.7e-07 60.1 801 21.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.7e-07 60.1 205 25.4
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 9.7e-07 60.1 216 25.5
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 1.3e-06 59.7 172 32.0
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 2.2e-06 58.9 171 31.6
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 2.8e-06 58.5 269 25.3
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 3.7e-06 58.2 248 25.0
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 3.7e-06 58.2 174 33.3
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 3.7e-06 58.2 261 26.4
HPP92_010043 Vanilla planifolia HOM05D005593 ORTHO05D006515 4.8e-06 57.8 264 22.7
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.2e-06 57.0 88 33.0
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 8.2e-06 57.0 185 29.2


User provided reference genes

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