Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010914 Chenopodium quinoa HOM05D002451 ORTHO05D007901 0.0e+00 1140.6 571 100.0
EL10Ac8g18383 Beta vulgaris HOM05D002451 ORTHO05D007901 2.3e-230 802.4 522 76.1
Ah.14g083250 Amaranthus hybridus HOM05D002451 ORTHO05D007901 7.5e-221 770.8 502 75.7
AUR62021412 Chenopodium quinoa HOM05D002451 ORTHO05D007901 8.6e-193 677.6 447 77.6
Sc08g0008000 Simmondsia chinensis HOM05D002451 ORTHO05D007901 6.4e-188 661.4 520 63.3
arahy.Tifrunner.gnm1.ann1.GUCG30 Arachis hypogaea HOM05D002451 ORTHO05D007901 5.2e-182 641.7 517 62.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.2e-182 641.7 523 62.5
Lj4g0024953 Lotus japonicus HOM05D002451 ORTHO05D007901 5.8e-181 638.3 530 62.3
Hund09106 Selenicereus undatus HOM05D002451 ORTHO05D007901 5.8e-181 638.3 597 57.5
Lalb_Chr05g0223211 Lupinus albus HOM05D002451 ORTHO05D007901 2.2e-180 636.3 547 60.0
Medtr8g102540 Medicago truncatula HOM05D002451 ORTHO05D007901 6.4e-180 634.8 520 62.7
GSVIVG01015305001 Vitis vinifera HOM05D002451 ORTHO05D007901 6.4e-180 634.8 519 61.5
Atru.chr7.1460 Acer truncatum HOM05D002451 ORTHO05D007901 8.3e-180 634.4 540 60.0
Psat7g017040 Pisum sativum HOM05D002451 ORTHO05D007901 1.6e-178 630.2 524 61.8
CiPaw.03G225500 Carya illinoinensis HOM05D002451 ORTHO05D007901 3.9e-177 625.5 516 60.3
MELO3C004587.2 Cucumis melo HOM05D002451 ORTHO05D007901 6.6e-177 624.8 500 62.2
Gorai.009G027400 Gossypium raimondii HOM05D002451 ORTHO05D007901 1.5e-176 623.6 521 61.0
CSS0003026 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D007901 1.2e-175 620.5 524 60.3
ClCG11G002150 Citrullus lanatus HOM05D002451 ORTHO05D007901 1.8e-174 616.7 533 59.7
Aqoxy7G01412 Aquilegia oxysepala HOM05D002451 ORTHO05D007901 4.0e-174 615.5 522 59.6
vmacro06250 Vaccinium macrocarpon HOM05D002451 ORTHO05D007901 5.2e-174 615.1 536 59.5
Glyma.05G227000 Glycine max HOM05D002451 ORTHO05D007901 6.8e-174 614.8 520 60.8
Actinidia32654 Actinidia chinensis HOM05D002451 ORTHO05D007901 8.9e-174 614.4 522 60.0
Hma1.2p1_0571F.1_g180680 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 2.6e-173 612.8 520 60.2
MD02G1065300 Malus domestica HOM05D002451 ORTHO05D007901 2.6e-173 612.8 527 59.2
MBI04_g20306_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D007901 3.4e-173 612.5 522 60.9
CANSAT56G2212 Cannabis sativa HOM05D002451 ORTHO05D007901 7.6e-173 611.3 523 58.9
CsaV3_2G001930 Cucumis sativus L. HOM05D002451 ORTHO05D007901 9.9e-173 610.9 531 59.3
Duzib168G1562 Durio zibethinus HOM05D002451 ORTHO05D007901 9.9e-173 610.9 522 60.5
Potri.018G087300 Populus trichocarpa HOM05D002451 ORTHO05D007901 2.9e-172 609.4 529 59.9
Cc06_g10440 Coffea canephora HOM05D002451 ORTHO05D007901 8.4e-172 607.8 513 61.0
FAN23G2627 Fragaria x ananassa HOM05D002451 ORTHO05D007901 8.4e-172 607.8 522 57.9
FAN26G3439 Fragaria x ananassa HOM05D002451 ORTHO05D007901 3.2e-171 605.9 522 58.2
RcHm_v2.0_Chr2g0091831 Rosa chinensis HOM05D002451 ORTHO05D007901 7.1e-171 604.7 533 57.4
FAN28G1338 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.6e-170 603.6 522 58.0
Dinv36690 Davidia involucrata HOM05D002451 ORTHO05D007901 4.6e-170 602.1 549 57.7
FAN26G0432 Fragaria x ananassa HOM05D002451 ORTHO05D007901 6.0e-170 601.7 522 57.9
AL4G38420 Arabidopsis lyrata HOM05D002451 ORTHO05D007901 1.0e-169 600.9 511 59.9
BcaC02g07322 Brassica carinata HOM05D002451 ORTHO05D007901 5.6e-168 595.1 523 58.3
CARHR135670 Cardamine hirsuta HOM05D002451 ORTHO05D007901 2.1e-167 593.2 519 59.7
AT2G40570 Arabidopsis thaliana HOM05D002451 ORTHO05D007901 2.8e-167 592.8 512 58.8
Sp4g22900 Schrenkiella parvula HOM05D002451 ORTHO05D007901 2.8e-167 592.8 526 58.4
BcaB06g29152 Brassica carinata HOM05D002451 ORTHO05D007901 4.8e-167 592.0 523 58.3
Solyc12g008450.2 Solanum lycopersicum HOM05D002451 ORTHO05D007901 8.1e-167 591.3 513 59.3
Eucgr.C00999 Eucalyptus grandis HOM05D002451 ORTHO05D007901 1.1e-166 590.9 530 57.4
Rhsim03G0237000 Rhododendron simsii HOM05D002451 ORTHO05D007901 1.4e-166 590.5 541 57.3
Sopen12g003400 Solanum pennellii HOM05D002451 ORTHO05D007901 2.4e-166 589.7 521 58.3
Lj7A665T28 Lonicera japonica HOM05D002451 ORTHO05D007901 9.0e-166 587.8 637 51.0
Oeu053181.2 Olea europaea HOM05D002451 ORTHO05D007901 9.0e-166 587.8 515 58.4
BolC4t28342H Brassica oleracea HOM05D002451 ORTHO05D007901 1.2e-165 587.4 523 57.9
Nitab4.5_0005668g0020 Nicotiana tabacum HOM05D002451 ORTHO05D007901 2.0e-165 586.6 523 58.1
A04p31020 Brassica napus HOM05D002451 ORTHO05D007901 5.8e-165 585.1 523 57.7
Lsat_1_v5_gn_7_39761 Lactuca sativa HOM05D002451 ORTHO05D007901 7.6e-165 584.7 514 57.0
BraA04t18559Z Brassica rapa HOM05D002451 ORTHO05D007901 9.9e-165 584.3 523 57.7
C04p68410 Brassica napus HOM05D002451 ORTHO05D007901 1.3e-164 583.9 523 57.4
MSTRG.10604 Avicennia marina HOM05D002451 ORTHO05D007901 3.8e-164 582.4 518 57.1
PGSC0003DMG400000298 Solanum tuberosum HOM05D002451 ORTHO05D007901 3.8e-164 582.4 524 58.2
Thhalv10016464m.g Eutrema salsugineum HOM05D002451 ORTHO05D007901 1.1e-163 580.9 547 56.3
THA.LOC104807537 Tarenaya hassleriana HOM05D002451 ORTHO05D007901 5.4e-163 578.6 529 55.6
ATR0705G045 Amborella trichopoda HOM05D002451 ORTHO05D007901 1.0e-161 574.3 538 55.0
COL.COLO4_34751 Corchorus olitorius HOM05D002451 ORTHO05D007901 1.7e-161 573.5 498 59.8
Migut.K00538 Erythranthe guttata HOM05D002451 ORTHO05D007901 2.3e-161 573.2 499 59.1
DCAR_012039 Daucus carota HOM05D002451 ORTHO05D007901 4.8e-159 565.5 453 63.1
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 6.2e-159 565.1 501 58.9
TPR.G23434 Trifolium pratense HOM05D002451 ORTHO05D007901 1.4e-158 563.9 461 62.9
VMungo0251G0535 Vigna mungo HOM05D002451 ORTHO05D007901 1.5e-157 560.5 471 62.2
Sed0018496 Sechium edule HOM05D002451 ORTHO05D007901 2.6e-157 559.7 460 60.9
HPP92_009804 Vanilla planifolia HOM05D002451 ORTHO05D007901 9.3e-155 551.2 525 53.3
Os06g0555500 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D007901 1.0e-153 547.7 517 54.5
TWI34G1500 Tripterygium wilfordii HOM05D002451 ORTHO05D007901 1.8e-153 547.0 468 60.3
Sabra18G0075400 Salix brachista HOM05D002451 ORTHO05D007901 1.5e-152 543.9 559 52.8
PSO063G0860 Papaver somniferum HOM05D002451 ORTHO05D007901 3.3e-152 542.7 458 60.9
Aa31LG3G1530 Aethionema arabicum HOM05D002451 ORTHO05D007901 9.6e-152 541.2 617 47.6
SalBow1G3696 Salvia bowleyana HOM05D002451 ORTHO05D007901 2.8e-151 539.7 532 53.9
SalBow1G8658 Salvia bowleyana HOM05D002451 ORTHO05D007901 1.8e-150 537.0 531 53.5
Peaxi162Scf00665g00035 Petunia axillaris HOM05D002451 ORTHO05D007901 5.3e-150 535.4 496 56.7
PGR142G3373 Punica granatum HOM05D002451 ORTHO05D007901 6.5e-148 528.5 461 59.4
SEGI_00986 Sequoiadendron giganteum HOM05D002451 ORTHO05D007901 1.3e-145 520.8 555 49.7
SHI02693 Sapria himalayana HOM05D002451 ORTHO05D007901 5.1e-145 518.8 536 51.9
Ciclev10008594m.g Citrus clementina HOM05D002451 ORTHO05D007901 5.7e-144 515.4 376 64.9
FAN19G3003 Fragaria x ananassa HOM05D002451 ORTHO05D007901 1.3e-143 514.2 424 59.7
CAN.G1241.33 Capsicum annuum HOM05D002451 ORTHO05D007901 1.2e-138 497.7 379 64.1
SpUn0061_0010 Schrenkiella parvula HOM05D002451 ORTHO05D007901 2.5e-136 490.0 376 64.9
Zm00001eb384640 Zea mays HOM05D002451 ORTHO05D007901 1.9e-131 473.8 462 53.7
Hma1.2p1_0571F.1_g180690 Hydrangea macrophylla HOM05D002451 ORTHO05D007901 5.5e-131 472.2 426 57.3
Nn8g39075 Nelumbo nucifera HOM05D002451 ORTHO05D007901 5.5e-131 472.2 459 54.5
Pp3c1_19270 Physcomitrium patens HOM05D002451 ORTHO05D007901 1.4e-129 467.6 571 45.9
Prupe.7G220200 Prunus persica HOM05D002451 ORTHO05D007901 2.3e-129 466.8 430 55.6
HanXRQChr09g0238871 Helianthus annuus HOM05D002451 ORTHO05D007901 1.1e-128 464.5 370 61.4
Mapoly0002s0306 Marchantia polymorpha HOM05D002451 ORTHO05D007901 5.7e-128 462.2 552 44.2
Cfa003184 Carpinus fangiana HOM05D002451 ORTHO05D007901 4.8e-127 459.1 409 56.2
Manes.16G108300 Manihot esculenta HOM05D002451 ORTHO05D007901 1.4e-126 457.6 428 53.5
SGA_v2.0_scaffold843G53664 Striga asiatica HOM05D002451 ORTHO05D007901 2.4e-126 456.8 460 52.8
AagrBONN_evm.TU.Sc2ySwM_117.4166 Anthoceros agrestis HOM05D002451 ORTHO05D007901 8.5e-124 448.4 513 47.8
Gohir.A05G025800 Gossypium hirsutum HOM05D002451 ORTHO05D007901 5.3e-118 429.1 400 55.2
Thecc.09G101000 Theobroma cacao HOM05D002451 ORTHO05D007901 2.2e-116 423.7 404 55.2
FvH4_1g06070 Fragaria vesca HOM05D002451 ORTHO05D007901 2.9e-116 423.3 405 52.8
SMO118G0195 Selaginella moellendorffii HOM05D002451 ORTHO05D007901 1.2e-114 417.9 520 45.6
Phvul.002G309000 Phaseolus vulgaris HOM05D002451 ORTHO05D007901 6.1e-114 415.6 397 55.2
TAR636G1745 Trochodendron aralioides HOM05D002451 ORTHO05D007901 8.8e-105 385.2 378 53.4
Carub.0004s2284 Capsella rubella HOM05D002451 ORTHO05D007901 3.7e-103 379.8 374 54.0
CAN.G1642.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.1e-102 378.3 421 47.5
SGA_v2.0_scaffold19G08736 Striga asiatica HOM05D002451 ORTHO05D007901 1.5e-91 341.3 239 68.2
CDE08G0666 Ceratophyllum demersum HOM05D002257 ORTHO05D007901 2.1e-90 337.4 369 49.1
Gohir.D05G027300 Gossypium hirsutum HOM05D002451 ORTHO05D007901 1.8e-81 307.8 260 58.5
MD15G1196200 Malus domestica HOM05D002451 ORTHO05D007901 3.7e-79 300.1 516 37.4
CBR_g41536 Chara braunii HOM05D002451 ORTHO05D007901 1.5e-75 288.1 512 36.1
SGA_v2.0_scaffold4172G54434 Striga asiatica HOM05D002451 ORTHO05D007901 9.5e-67 258.8 241 54.8
MCO03G573 Micromonas commoda HOM05D002451 ORTHO05D007901 2.1e-66 257.7 570 32.6
QL02p041683 Quercus lobata HOM05D002451 ORTHO05D007901 3.1e-57 227.3 155 71.0
SGA_v2.0_scaffold19G08729 Striga asiatica HOM05D002451 ORTHO05D007901 2.9e-55 220.7 141 73.0
unitig_46.g18399 Utricularia gibba HOM05D002451 ORTHO05D007901 5.4e-54 216.5 269 44.6
ECA240G2417 Erigeron canadensis HOM05D002451 ORTHO05D007901 1.3e-50 205.3 420 34.5
PRCOL_00006066 Prasinoderma coloniale HOM05D000173 ORTHO05D004400 1.2e-45 188.7 335 33.7
CDE02G1621 Ceratophyllum demersum HOM05D002451 ORTHO05D007901 6.0e-45 186.4 157 56.7
Cre06.g272100 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D007901 3.4e-40 170.6 129 61.2
Nitab4.5_0000566g0090 Nicotiana tabacum HOM05D002451 ORTHO05D007901 5.6e-35 153.3 99 74.7
Cpa.g.sc40.100 Carica papaya HOM05D002451 ORTHO05D007901 6.2e-34 149.8 94 77.7
Cpa.g.c44357 Carica papaya HOM05D002451 ORTHO05D007901 2.4e-33 147.9 138 54.3
unitig_46.g18400 Utricularia gibba HOM05D002451 ORTHO05D007901 4.0e-33 147.1 95 73.7
CAN.G4309.1 Capsicum annuum HOM05D002451 ORTHO05D007901 1.8e-20 105.1 127 44.9
Nn1g07675 Nelumbo nucifera HOM05D002451 ORTHO05D007901 6.7e-20 103.2 114 50.9
TAR636G3106 Trochodendron aralioides HOM05D002451 ORTHO05D007901 1.6e-13 82.0 51 68.6
TPR.G23499 Trifolium pratense HOM05D002451 ORTHO05D007901 2.0e-11 75.1 77 45.5
Ciclev10010851m.g Citrus clementina HOM05D002451 ORTHO05D007901 2.8e-10 71.2 44 70.5
CBR_g41538 Chara braunii HOM05D002451 ORTHO05D007901 1.7e-07 62.0 105 36.2


User provided reference genes

Program Settings