Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 2675.2 1358 100.0
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 2523.8 1359 94.9
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 0.0e+00 2184.8 1327 86.4
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1565.8 1371 62.9
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1419.1 1359 58.7
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 0.0e+00 1324.3 1248 60.3
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 0.0e+00 1265.8 1376 55.0
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 0.0e+00 1083.6 1362 49.6
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 7.5e-211 738.8 1396 40.8
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 3.0e-119 434.5 1346 33.4
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.7e-118 429.5 1438 31.8
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 3.7e-117 427.6 1354 33.6
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 1.7e-114 418.7 1316 33.5
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.6e-112 411.0 1351 32.3
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 7.7e-107 393.3 1228 32.7
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 2.1e-104 385.2 1369 32.5
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.0e-103 381.3 1425 31.5
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 4.5e-99 367.5 1432 30.9
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 3.4e-94 351.3 1404 30.8
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.1e-89 336.3 1330 31.3
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.2e-78 299.7 1484 28.7
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 7.5e-70 270.4 1359 28.3
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.2e-62 246.5 1199 28.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.1e-60 237.3 1333 28.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 9.2e-60 236.9 1334 28.1
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.1e-48 199.1 1249 26.9
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 6.2e-48 197.6 1307 26.5
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 8.4e-45 187.2 1260 27.3
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.9e-44 186.0 1305 27.1
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 5.4e-44 184.5 1257 27.4
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 9.3e-44 183.7 1277 26.0
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.6e-43 183.0 1259 27.2
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 2.7e-43 182.2 1051 25.7
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.3e-42 179.9 1248 27.0
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.7e-42 179.5 1250 26.7
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.0e-42 178.7 1248 27.2
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.9e-42 178.3 1250 26.7
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 6.6e-42 177.6 1297 26.5
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 1.9e-41 176.0 1244 26.5
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 6.9e-39 167.5 296 42.6
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.5e-38 164.9 1214 26.9
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 1.3e-37 163.3 1297 26.1
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.3e-37 163.3 1215 25.8
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 5.4e-36 157.9 1249 26.2
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.8e-34 152.9 1246 24.6
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 5.1e-34 151.4 1270 26.0
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 3.3e-33 148.7 1275 26.9
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 2.0e-30 139.4 1314 25.8
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 1.0e-29 137.1 1257 24.9
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.9e-28 132.9 1333 24.8
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 7.9e-27 127.5 1277 25.4
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 3.0e-26 125.6 1278 24.6
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 7.4e-25 120.9 1092 24.5
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 7.4e-25 120.9 1092 24.5
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 7.4e-25 120.9 1271 25.5
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 2.1e-24 119.4 1276 23.2
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 8.2e-24 117.5 1238 25.3
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 8.2e-24 117.5 1300 25.2
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.4e-23 115.9 1332 24.8
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.4e-23 115.9 1332 24.8
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 1.2e-22 113.6 1314 24.7
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.5e-22 111.7 1178 25.1
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 5.8e-22 111.3 1126 25.9
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 7.6e-22 110.9 609 28.9
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 1.7e-21 109.8 139 49.6
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 3.2e-20 105.5 1196 25.3
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 9.3e-20 104.0 1257 22.9
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.6e-19 103.2 1214 24.5
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.1e-19 101.3 1234 24.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 2.3e-18 99.4 304 32.9
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 4.3e-17 95.1 1317 24.0
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.6e-16 93.2 1469 24.8
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 2.8e-16 92.4 1232 24.6
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 3.7e-16 92.0 1233 24.9
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 4.8e-16 91.7 1186 24.7
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 6.3e-16 91.3 1298 24.0
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.4e-15 90.1 1349 23.6
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.4e-15 89.4 1216 24.7
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.1e-15 89.0 1127 24.0
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 6.9e-15 87.8 1090 23.7
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 9.0e-15 87.4 1270 24.8
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.2e-14 87.0 1251 23.4
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 1.0e-13 84.0 224 34.8
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.9e-13 82.4 1201 23.9
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 6.5e-13 81.3 1257 24.7
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 4.2e-12 78.6 1299 24.2
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 1.6e-11 76.6 1134 23.6
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.1e-11 76.3 285 28.8
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 3.6e-11 75.5 1194 24.0
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 3.6e-11 75.5 277 28.5
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 6.1e-11 74.7 626 26.5
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 5.1e-10 71.6 1248 22.3
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 8.8e-10 70.9 287 28.9
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 1.1e-09 70.5 206 34.5
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.5e-09 69.3 1132 23.9
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 2.5e-09 69.3 1111 25.4
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 4.3e-09 68.6 290 29.7
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 5.7e-09 68.2 732 25.3
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 5.7e-09 68.2 683 23.3
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 1.3e-08 67.0 1298 24.2
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.7e-08 66.6 287 28.6
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 2.8e-08 65.9 1174 22.8
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 2.8e-08 65.9 359 26.7
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 3.7e-08 65.5 266 30.5
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 3.7e-08 65.5 267 30.0
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 3.7e-08 65.5 267 30.0
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 3.7e-08 65.5 266 30.5
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 3.7e-08 65.5 267 30.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 4.8e-08 65.1 1262 23.8
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 6.3e-08 64.7 1426 23.6
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 6.3e-08 64.7 1375 23.3
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 8.2e-08 64.3 267 30.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 8.2e-08 64.3 290 32.4
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.2e-08 64.3 249 29.7
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.1e-07 63.9 269 34.9
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.1e-07 63.9 288 28.1
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 3.1e-07 62.4 286 29.4
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 9.1e-07 60.8 281 27.0
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 9.1e-07 60.8 293 33.1
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.2e-06 60.5 281 29.2
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 2.0e-06 59.7 294 30.6
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 2.6e-06 59.3 309 25.9
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 4.5e-06 58.5 287 26.8


User provided reference genes

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