Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010708 Chenopodium quinoa HOM05D006148 ORTHO05D007955 4.3e-53 211.5 139 100.0
AUR62027260 Chenopodium quinoa HOM05D006148 ORTHO05D007955 7.5e-50 200.7 139 95.7
AUR62017180 Chenopodium quinoa HOM05D006148 ORTHO05D007955 2.8e-44 182.2 176 75.6
EL10Ac5g12797 Beta vulgaris HOM05D006148 ORTHO05D007955 1.3e-33 146.7 134 63.4
Sc22g0005540 Simmondsia chinensis HOM05D006148 ORTHO05D007955 5.2e-27 124.8 129 56.6
Hund11457 Selenicereus undatus HOM05D006148 ORTHO05D007955 1.3e-25 120.2 135 51.9
Cc02_g08620 Coffea canephora HOM05D006148 ORTHO05D007955 1.2e-18 97.1 137 46.0
MSTRG.9371 Avicennia marina HOM05D006148 ORTHO05D007955 2.6e-18 95.9 133 46.6
Aqoxy7G03487 Aquilegia oxysepala HOM05D006148 ORTHO05D007955 3.4e-18 95.5 133 46.6
Dinv21692 Davidia involucrata HOM05D006148 ORTHO05D007955 5.8e-18 94.7 134 45.5
Ciclev10022620m.g Citrus clementina HOM05D006148 ORTHO05D007955 2.2e-17 92.8 134 43.3
Oeu040676.1 Olea europaea HOM05D006148 ORTHO05D007955 3.8e-17 92.0 134 43.3
unitig_46.g17987 Utricularia gibba HOM05D006148 ORTHO05D007955 3.8e-17 92.0 125 45.6
SGA_v2.0_scaffold377G50308 Striga asiatica HOM05D006148 ORTHO05D007955 4.9e-17 91.7 135 42.2
Ah.07g196390 Amaranthus hybridus HOM05D006148 ORTHO05D007955 6.4e-17 91.3 78 62.8
Migut.I00620 Erythranthe guttata HOM05D006148 ORTHO05D007955 6.4e-17 91.3 125 45.6
Rhsim07G0118900 Rhododendron simsii HOM05D006148 ORTHO05D007955 6.4e-17 91.3 123 46.3
TWI15G0129 Tripterygium wilfordii HOM05D006148 ORTHO05D007955 6.4e-17 91.3 125 46.4
Gohir.D12G216200 Gossypium hirsutum HOM05D006148 ORTHO05D007955 8.4e-17 90.9 140 43.6
Gorai.008G231600 Gossypium raimondii HOM05D006148 ORTHO05D007955 8.4e-17 90.9 140 43.6
SGA_v2.0_scaffold40G15681 Striga asiatica HOM05D006148 ORTHO05D007955 8.4e-17 90.9 135 42.2
CSS0033428 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 1.1e-16 90.5 130 45.4
vmacro14126 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.1e-16 90.5 133 43.6
unitig_747.g21320 Utricularia gibba HOM05D006148 ORTHO05D007955 1.4e-16 90.1 125 44.0
Gohir.A12G213600 Gossypium hirsutum HOM05D006148 ORTHO05D007955 1.9e-16 89.7 140 42.9
Thecc.03G242700 Theobroma cacao HOM05D006148 ORTHO05D007955 1.9e-16 89.7 123 47.2
Oeu017209.1 Olea europaea HOM05D006148 ORTHO05D007955 2.4e-16 89.4 134 43.3
MD04G1051900 Malus domestica HOM05D006148 ORTHO05D007955 3.2e-16 89.0 125 44.0
Prupe.5G058400 Prunus persica HOM05D006148 ORTHO05D007955 4.2e-16 88.6 138 42.8
Nitab4.5_0000506g0080 Nicotiana tabacum HOM05D006148 ORTHO05D007955 5.4e-16 88.2 125 43.2
Hma1.2p1_0840F.1_g226570 Hydrangea macrophylla HOM05D006148 ORTHO05D007955 7.1e-16 87.8 134 41.0
Manes.02G044300 Manihot esculenta HOM05D006148 ORTHO05D007955 7.1e-16 87.8 125 44.0
BolC1t02497H Brassica oleracea HOM05D006148 ORTHO05D007955 9.3e-16 87.4 122 43.4
MD06G1048200 Malus domestica HOM05D006148 ORTHO05D007955 9.3e-16 87.4 125 43.2
CiPaw.12G047200 Carya illinoinensis HOM05D006148 ORTHO05D007955 1.2e-15 87.0 134 41.0
BcaNung00135 Brassica carinata HOM05D006148 ORTHO05D007955 1.6e-15 86.7 135 40.7
TAR375G0576 Trochodendron aralioides HOM05D006148 ORTHO05D007955 1.6e-15 86.7 131 43.5
MBI15_g47175_MAGBIO Magnolia biondii HOM05D006148 ORTHO05D007955 2.1e-15 86.3 125 44.8
BcaC09g50434 Brassica carinata HOM05D006148 ORTHO05D007955 2.7e-15 85.9 122 42.6
A01p20300 Brassica napus HOM05D006148 ORTHO05D007955 2.7e-15 85.9 122 42.6
BraA01t01958Z Brassica rapa HOM05D006148 ORTHO05D007955 2.7e-15 85.9 122 42.6
CSS0030063 Camellia sinensis var. sinensis HOM05D006148 ORTHO05D007955 2.7e-15 85.9 135 41.5
Glyma.16G092500 Glycine max HOM05D006148 ORTHO05D007955 2.7e-15 85.9 136 40.4
Sp7g17180 Schrenkiella parvula HOM05D006148 ORTHO05D007955 2.7e-15 85.9 140 39.3
Solyc08g077970.2 Solanum lycopersicum HOM05D006148 ORTHO05D007955 2.7e-15 85.9 125 43.2
C01p25460 Brassica napus HOM05D006148 ORTHO05D007955 3.5e-15 85.5 133 41.4
DCAR_005581 Daucus carota HOM05D006148 ORTHO05D007955 3.5e-15 85.5 133 39.8
Nitab4.5_0003456g0030 Nicotiana tabacum HOM05D006148 ORTHO05D007955 4.6e-15 85.1 125 42.4
CAN.G761.17 Capsicum annuum HOM05D006148 ORTHO05D007955 6.0e-15 84.7 125 42.4
Actinidia10861 Actinidia chinensis HOM05D006148 ORTHO05D007955 7.8e-15 84.3 133 41.4
Ca_20510_v3 Cicer arietinum L. HOM05D006148 ORTHO05D007955 7.8e-15 84.3 125 42.4
PGSC0003DMG400026249 Solanum tuberosum HOM05D006148 ORTHO05D007955 7.8e-15 84.3 125 42.4
CANSAT21G1845 Cannabis sativa HOM05D006148 ORTHO05D007955 1.0e-14 84.0 134 38.8
Duzib068G0643 Durio zibethinus HOM05D006148 ORTHO05D007955 1.0e-14 84.0 140 40.7
Nitab4.5_0007628g0010 Nicotiana tabacum HOM05D006148 ORTHO05D007955 1.0e-14 84.0 125 42.4
PGR031G0321 Punica granatum HOM05D006148 ORTHO05D007955 1.0e-14 84.0 135 40.0
Rhsim07G0118700 Rhododendron simsii HOM05D006148 ORTHO05D007955 1.0e-14 84.0 142 40.1
ClCG09G012770 Citrullus lanatus HOM05D006148 ORTHO05D007955 1.3e-14 83.6 123 44.7
Potri.012G038600 Populus trichocarpa HOM05D006148 ORTHO05D007955 1.3e-14 83.6 133 39.1
Sopen08g026480 Solanum pennellii HOM05D006148 ORTHO05D007955 1.3e-14 83.6 125 42.4
Thhalv10026445m.g Eutrema salsugineum HOM05D006148 ORTHO05D007955 2.3e-14 82.8 140 39.3
HanXRQChr17g0550021 Helianthus annuus HOM05D006148 ORTHO05D007955 2.3e-14 82.8 131 38.9
Sabra12G0027000 Salix brachista HOM05D006148 ORTHO05D007955 2.3e-14 82.8 144 36.8
Medtr3g086600 Medicago truncatula HOM05D006148 ORTHO05D007955 3.0e-14 82.4 131 38.9
Eucgr.D02128 Eucalyptus grandis HOM05D006148 ORTHO05D007955 3.9e-14 82.0 123 42.3
Lj3g0001636 Lotus japonicus HOM05D006148 ORTHO05D007955 5.1e-14 81.6 134 38.8
Sed0014825 Sechium edule HOM05D006148 ORTHO05D007955 5.1e-14 81.6 123 43.1
Aa31LG2G13090 Aethionema arabicum HOM05D006148 ORTHO05D007955 8.7e-14 80.9 128 40.6
PGSC0003DMG400026577 Solanum tuberosum HOM05D006148 ORTHO05D007955 8.7e-14 80.9 125 39.2
Glyma.09G078400 Glycine max HOM05D006148 ORTHO05D007955 1.1e-13 80.5 109 44.0
Lsat_1_v5_gn_3_16181 Lactuca sativa HOM05D006148 ORTHO05D007955 1.1e-13 80.5 123 40.7
Lj2A228G47 Lonicera japonica HOM05D006148 ORTHO05D007955 1.1e-13 80.5 109 45.9
Solyc06g060920.3 Solanum lycopersicum HOM05D006148 ORTHO05D007955 1.1e-13 80.5 137 38.7
Carub.0007s2441 Capsella rubella HOM05D006148 ORTHO05D007955 1.5e-13 80.1 140 39.3
ECA248G1075 Erigeron canadensis HOM05D006148 ORTHO05D007955 1.5e-13 80.1 123 39.0
SalBow1G4160 Salvia bowleyana HOM05D006148 ORTHO05D007955 1.5e-13 80.1 123 43.1
Sopen06g021070 Solanum pennellii HOM05D006148 ORTHO05D007955 1.5e-13 80.1 137 38.7
THA.LOC104814463 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 1.9e-13 79.7 133 39.8
VMungo0331G0425 Vigna mungo HOM05D006148 ORTHO05D007955 1.9e-13 79.7 121 41.3
CsaV3_3G049830 Cucumis sativus L. HOM05D006148 ORTHO05D007955 3.3e-13 79.0 134 41.8
Phvul.010G018500 Phaseolus vulgaris HOM05D006148 ORTHO05D007955 3.3e-13 79.0 125 40.0
Psat5g091640 Pisum sativum HOM05D006148 ORTHO05D007955 3.3e-13 79.0 131 40.5
THA.LOC104807925 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 4.3e-13 78.6 133 39.8
CDE04G1348 Ceratophyllum demersum HOM05D006148 ORTHO05D007955 5.6e-13 78.2 131 38.9
Lj3A721T48 Lonicera japonica HOM05D006148 ORTHO05D007955 5.6e-13 78.2 123 43.9
AT4G17010 Arabidopsis thaliana HOM05D006148 ORTHO05D007955 7.3e-13 77.8 140 40.7
Lalb_Chr18g0047251 Lupinus albus HOM05D006148 ORTHO05D007955 7.3e-13 77.8 133 37.6
Peaxi162Scf00190g00088 Petunia axillaris HOM05D006148 ORTHO05D007955 7.3e-13 77.8 143 36.4
AL7G37710 Arabidopsis lyrata HOM05D006148 ORTHO05D007955 9.6e-13 77.4 140 40.0
Sed0021147 Sechium edule HOM05D006148 ORTHO05D007955 9.6e-13 77.4 135 40.0
Atru.chr9.1220 Acer truncatum HOM05D006148 ORTHO05D007955 1.3e-12 77.0 131 38.9
TPR.G30538 Trifolium pratense HOM05D006148 ORTHO05D007955 1.3e-12 77.0 125 40.0
MELO3C003333.2 Cucumis melo HOM05D006148 ORTHO05D007955 1.6e-12 76.6 123 40.7
Lalb_Chr15g0078661 Lupinus albus HOM05D006148 ORTHO05D007955 2.1e-12 76.3 133 35.3
FvH4_5g20230 Fragaria vesca HOM05D006148 ORTHO05D007955 2.8e-12 75.9 125 39.2
FAN13G2154 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.8e-12 75.9 125 39.2
FAN13G3051 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.8e-12 75.9 125 39.2
RcHm_v2.0_Chr7g0205301 Rosa chinensis HOM05D006148 ORTHO05D007955 3.6e-12 75.5 125 37.6
THA.LOC104812735 Tarenaya hassleriana HOM05D006148 ORTHO05D007955 4.8e-12 75.1 133 36.8
HPP92_005702 Vanilla planifolia HOM05D006148 ORTHO05D007955 4.8e-12 75.1 121 38.0
DCAR_008334 Daucus carota HOM05D006148 ORTHO05D007955 6.2e-12 74.7 134 36.6
CARHR223570 Cardamine hirsuta HOM05D006148 ORTHO05D007955 8.1e-12 74.3 122 38.5
Nn1g00796 Nelumbo nucifera HOM05D006148 ORTHO05D007955 5.3e-11 71.6 117 41.0
Os04g0431800 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 6.9e-11 71.2 122 36.1
arahy.Tifrunner.gnm1.ann1.0GR2GF Arachis hypogaea HOM05D006148 ORTHO05D007955 5.8e-10 68.2 136 32.4
arahy.Tifrunner.gnm1.ann1.L2DS42 Arachis hypogaea HOM05D006148 ORTHO05D007955 5.8e-10 68.2 136 32.4
FAN04G0567 Fragaria x ananassa HOM05D006148 ORTHO05D007955 7.6e-10 67.8 147 33.3
vmacro00048 Vaccinium macrocarpon HOM05D006148 ORTHO05D007955 1.3e-09 67.0 99 44.4
Zm00001eb422600 Zea mays HOM05D006148 ORTHO05D007955 1.7e-09 66.6 144 32.6
Os02g0494600 Oryza sativa ssp. japonica HOM05D006148 ORTHO05D007955 2.9e-09 65.9 122 34.4
PSO541G2943 Papaver somniferum HOM05D006148 ORTHO05D007955 8.4e-09 64.3 120 33.3
QL12p009037 Quercus lobata HOM05D006148 ORTHO05D007955 1.4e-08 63.5 38 76.3
FAN08G3523 Fragaria x ananassa HOM05D006148 ORTHO05D007955 2.4e-08 62.8 151 31.8
PSO675G9254 Papaver somniferum HOM05D006148 ORTHO05D007955 4.2e-08 62.0 126 31.7
Haze_05448 Corylus avellana HOM05D006148 ORTHO05D007955 7.1e-08 61.2 38 73.7
COL.COLO4_07508 Corchorus olitorius HOM05D006148 ORTHO05D007955 3.5e-07 58.9 38 73.7
ATR0767G234 Amborella trichopoda HOM05D006148 ORTHO05D007955 1.0e-06 57.4 125 33.6


User provided reference genes

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