Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.3e-102 375.2 207 100.0
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.6e-91 339.0 198 92.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 3.2e-65 252.3 200 73.0
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.7e-43 179.5 199 55.8
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.5e-41 172.9 222 53.6
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 1.2e-40 170.6 202 58.9
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 7.8e-35 151.4 184 51.1
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.0e-34 151.0 157 58.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.3e-34 149.8 159 57.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.5e-33 146.4 163 57.1
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.5e-33 146.4 163 57.1
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.5e-33 146.4 163 57.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.6e-33 145.2 163 56.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 9.5e-33 144.4 172 52.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 2.3e-31 139.8 155 55.5
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.3e-31 139.8 153 57.5
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.3e-29 134.0 166 51.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.7e-29 132.5 211 48.3
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 4.9e-29 132.1 182 51.1
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 3.2e-28 129.4 161 52.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 3.2e-28 129.4 207 47.3
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 4.1e-28 129.0 181 49.7
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.4e-28 128.6 152 56.6
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 7.0e-28 128.3 171 50.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 2.1e-27 126.7 194 50.0
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 3.5e-27 125.9 134 56.7
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.0e-26 124.4 152 52.6
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.0e-26 124.4 188 46.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.3e-26 124.0 197 47.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.0e-26 122.9 138 56.5
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 3.0e-26 122.9 196 46.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.9e-26 122.5 175 48.0
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 6.6e-26 121.7 146 55.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 6.6e-26 121.7 134 56.7
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 2.5e-25 119.8 145 53.1
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 3.3e-25 119.4 144 54.9
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.3e-25 119.4 197 47.7
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 5.6e-25 118.6 216 45.8
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 5.6e-25 118.6 216 45.4
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.3e-25 118.2 149 53.0
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.6e-24 117.1 149 53.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-24 117.1 149 52.3
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.6e-24 117.1 149 52.3
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.6e-24 117.1 168 48.8
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 6.2e-24 115.2 199 46.2
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.4e-23 114.0 208 44.7
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.1e-23 112.8 158 48.7
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-23 112.8 143 52.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.0e-23 112.5 145 51.0
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.0e-23 112.5 208 44.7
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.2e-22 110.9 134 56.7
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 2.6e-22 109.8 177 45.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 4.4e-22 109.0 201 44.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 7.5e-22 108.2 211 42.2
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.7e-21 107.1 193 45.6
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 3.7e-21 105.9 141 48.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 8.3e-21 104.8 158 44.9
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 8.3e-21 104.8 148 48.0
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.4e-20 104.0 194 42.8
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 2.4e-20 103.2 131 54.2
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 3.2e-20 102.8 130 46.9
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.2e-20 102.8 175 42.9
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.1e-20 102.4 166 44.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 5.4e-20 102.1 175 42.9
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 5.4e-20 102.1 157 45.2
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.1e-20 101.7 177 43.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-19 100.9 146 47.9
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.2e-19 100.9 174 44.3
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 1.6e-19 100.5 123 56.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.7e-19 99.8 164 45.1
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.5e-19 99.4 139 49.6
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 3.5e-19 99.4 139 47.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 7.8e-19 98.2 193 43.5
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 7.8e-19 98.2 129 51.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.7e-18 97.1 212 40.1
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.7e-18 97.1 172 40.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.0e-18 96.3 154 45.5
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.1e-18 95.5 117 55.6
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 5.1e-18 95.5 147 47.6
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 5.1e-18 95.5 117 51.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 8.6e-18 94.7 168 44.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.1e-17 94.4 143 49.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.9e-17 93.6 157 44.6
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-17 93.6 129 48.8
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 2.5e-17 93.2 199 40.2
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.3e-17 92.8 155 45.8
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 4.3e-17 92.4 157 42.7
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 4.3e-17 92.4 160 45.0
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.5e-17 91.3 138 47.1
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.8e-16 89.7 152 42.1
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.8e-16 89.7 119 48.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 3.6e-16 89.4 141 48.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 8.1e-16 88.2 140 42.1
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-15 87.8 143 48.3
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 2.4e-15 86.7 196 39.3
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-15 86.3 132 47.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.9e-15 84.7 109 53.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.9e-15 84.7 200 37.0
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.5e-14 84.0 188 38.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.4e-14 82.4 128 49.2
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 5.8e-14 82.0 142 42.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 9.9e-14 81.3 134 44.8
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 4.9e-13 79.0 137 43.1
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.9e-12 77.0 173 39.3
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.2e-12 75.9 87 55.2
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.1e-12 75.1 173 38.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.2e-12 74.7 159 39.6
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 9.2e-12 74.7 133 40.6
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.7e-11 73.2 132 40.9
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.7e-11 73.2 133 42.1
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 6.0e-11 72.0 77 61.0
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 6.0e-11 72.0 118 41.5
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.7e-10 70.5 141 39.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 6.6e-10 68.6 131 44.3
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 8.7e-10 68.2 202 36.1
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.9e-09 67.0 187 36.4
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.9e-09 67.0 166 36.7
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 7.3e-09 65.1 140 44.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.6e-09 64.7 202 35.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-08 63.9 152 36.8
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.1e-08 63.5 139 38.1
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 2.1e-08 63.5 139 38.1
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-08 63.2 139 38.1
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 8.1e-08 61.6 99 47.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 8.1e-08 61.6 89 50.6
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.1e-07 61.2 178 33.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-07 61.2 158 32.3
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-07 60.8 201 34.8
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-07 60.8 193 33.2
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.8e-07 60.5 72 52.8
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 5.3e-07 58.9 93 47.3
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 5.3e-07 58.9 151 36.4
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 1.2e-06 57.8 195 32.8
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.2e-06 57.8 142 41.5
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.0e-06 57.0 105 41.9
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 2.0e-06 57.0 89 44.9
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.8e-06 55.5 192 37.0
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 7.6e-06 55.1 177 32.8
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 9.9e-06 54.7 90 44.4


User provided reference genes

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