Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.3e-44 180.6 92 100.0
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.4e-43 177.9 91 97.8
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 2.4e-28 128.6 92 72.8
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.5e-22 109.4 100 65.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 2.8e-21 105.1 96 65.6
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.1e-16 87.4 93 55.9
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.3e-15 85.5 89 56.2
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 4.0e-15 84.7 90 57.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 5.2e-15 84.3 92 54.3
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.2e-14 83.2 83 51.8
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 3.4e-14 81.6 98 56.1
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.7e-14 80.9 92 53.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-13 79.7 92 53.3
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-13 79.3 95 56.8
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.2e-13 79.0 80 58.8
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.8e-13 78.6 90 54.4
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 8.3e-13 77.0 68 61.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.3e-13 77.0 90 50.0
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.3e-13 77.0 92 52.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 8.3e-13 77.0 88 50.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-12 76.6 90 50.0
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-12 76.6 80 58.8
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-12 76.3 80 58.8
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.8e-12 75.9 90 53.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.8e-12 75.9 95 48.4
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 2.4e-12 75.5 94 50.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 4.1e-12 74.7 93 51.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.4e-12 74.3 69 60.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.4e-12 74.3 89 49.4
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.4e-12 74.3 95 48.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.4e-12 74.3 95 48.4
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 7.0e-12 73.9 68 61.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 7.0e-12 73.9 89 49.4
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 7.0e-12 73.9 68 61.8
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 9.2e-12 73.6 93 51.6
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.2e-11 73.2 71 57.7
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.2e-11 73.2 95 49.5
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.6e-11 72.8 68 60.3
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.7e-11 72.0 76 53.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 2.7e-11 72.0 87 46.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.7e-11 72.0 96 49.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.7e-11 72.0 68 58.8
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.7e-11 72.0 68 58.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.5e-11 71.6 71 57.7
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.5e-11 71.6 76 51.3
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.5e-11 71.6 72 61.1
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.5e-11 71.2 73 57.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.8e-11 70.5 71 56.3
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 7.8e-11 70.5 71 57.7
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 7.8e-11 70.5 67 56.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 7.8e-11 70.5 68 55.9
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.8e-10 68.2 71 53.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 3.8e-10 68.2 74 50.0
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 5.0e-10 67.8 78 51.3
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.0e-10 67.8 81 48.1
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.0e-10 67.8 93 44.1
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.0e-10 67.8 72 52.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 6.6e-10 67.4 69 56.5
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 8.6e-10 67.0 89 48.3
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 8.6e-10 67.0 78 51.3
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 8.6e-10 67.0 93 44.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.6e-10 67.0 93 44.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.6e-10 67.0 93 44.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.5e-09 66.2 98 43.9
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.9e-09 65.9 85 49.4
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.3e-09 64.7 73 50.7
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 4.3e-09 64.7 95 46.3
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 7.3e-09 63.9 73 52.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.5e-09 63.5 79 49.4
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 9.5e-09 63.5 74 52.7
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 9.5e-09 63.5 83 45.8
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 9.5e-09 63.5 76 47.4
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.6e-08 62.8 84 42.9
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.1e-08 62.4 92 44.6
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 2.8e-08 62.0 82 47.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 2.8e-08 62.0 78 48.7
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.8e-08 62.0 83 45.8
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 3.6e-08 61.6 78 47.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.7e-08 61.2 93 44.1
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 4.7e-08 61.2 92 43.5
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.7e-08 61.2 71 50.7
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.1e-08 60.8 65 50.8
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 6.1e-08 60.8 73 49.3
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 8.0e-08 60.5 67 49.3
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 8.0e-08 60.5 92 38.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.0e-07 60.1 92 44.6
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 1.0e-07 60.1 90 41.1
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.4e-07 59.7 76 46.1
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.4e-07 59.7 66 54.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.4e-07 59.7 91 45.1
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 1.8e-07 59.3 41 73.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.8e-07 59.3 76 48.7
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.3e-07 58.9 77 42.9
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.0e-07 58.5 48 58.3
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.0e-07 58.5 81 44.4
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.0e-07 58.2 48 58.3
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.0e-07 58.2 92 44.6
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.0e-07 58.2 93 40.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.2e-07 57.8 70 45.7
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 5.2e-07 57.8 80 45.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.2e-07 57.8 82 45.1
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.2e-07 57.8 105 40.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 6.8e-07 57.4 95 46.3
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.9e-07 57.0 76 46.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.2e-06 56.6 74 45.9
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 2.0e-06 55.8 78 46.2
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.4e-06 54.7 83 44.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.4e-06 54.7 80 43.8
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.4e-06 54.7 57 47.4
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.7e-06 54.3 83 44.6
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.7e-06 54.3 65 47.7
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 5.7e-06 54.3 82 43.9
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 9.8e-06 53.5 46 60.9
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 9.8e-06 53.5 68 42.6
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 9.8e-06 53.5 67 46.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 9.8e-06 53.5 91 37.4


User provided reference genes

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