Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.2e-118 427.2 231 100.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.2e-110 402.5 231 94.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 2.6e-95 352.4 231 84.4
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.0e-77 291.2 233 71.7
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.0e-77 291.2 233 71.7
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 7.3e-74 281.2 233 69.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.9e-69 266.5 237 65.4
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.4e-69 265.0 231 67.1
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 5.4e-69 265.0 231 67.1
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.1e-66 257.3 238 61.8
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 5.6e-66 255.0 233 64.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 7.3e-66 254.6 238 63.4
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 9.5e-66 254.2 238 62.2
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-65 253.4 190 72.1
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.8e-65 252.7 190 72.1
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.8e-65 252.7 246 61.8
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.8e-64 248.1 238 62.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 2.0e-63 246.5 234 62.8
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 2.0e-63 246.5 234 62.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.6e-63 246.1 248 60.1
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 5.8e-63 245.0 242 59.5
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 5.8e-63 245.0 240 61.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 7.5e-63 244.6 238 61.8
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 9.8e-63 244.2 242 59.5
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 2.2e-62 243.0 237 62.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 2.2e-62 243.0 238 62.6
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.9e-62 242.7 244 59.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.9e-62 242.7 232 63.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 4.9e-62 241.9 242 60.3
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 8.3e-62 241.1 235 60.0
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.9e-61 240.0 239 61.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.9e-61 240.0 236 61.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.4e-61 239.6 238 61.3
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 3.2e-61 239.2 236 61.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.2e-61 239.2 231 61.0
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 5.4e-61 238.4 238 61.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 7.0e-61 238.0 242 59.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 7.0e-61 238.0 231 62.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 9.2e-61 237.7 193 69.9
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.2e-60 237.3 237 62.0
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 2.1e-60 236.5 236 59.3
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 2.1e-60 236.5 236 59.3
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.7e-60 236.1 194 68.6
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.6e-60 235.3 240 60.0
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.0e-60 235.0 237 59.1
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 6.0e-60 235.0 236 59.3
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 6.0e-60 235.0 228 59.6
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 6.0e-60 235.0 233 60.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 7.8e-60 234.6 228 60.1
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 7.8e-60 234.6 235 61.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 1.0e-59 234.2 243 58.0
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.0e-59 234.2 236 59.3
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 228 59.6
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 1.3e-59 233.8 202 66.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 2.3e-59 233.0 237 61.6
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 3.0e-59 232.6 236 58.9
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.0e-59 232.6 244 57.4
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 3.0e-59 232.6 231 61.0
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 3.0e-59 232.6 228 60.5
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-59 232.6 188 67.6
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 5.1e-59 231.9 239 60.3
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 6.6e-59 231.5 236 58.9
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 6.6e-59 231.5 235 61.3
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 6.6e-59 231.5 235 61.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 6.6e-59 231.5 234 59.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.1e-58 230.7 241 60.2
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.1e-58 230.7 231 60.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.5e-58 230.3 236 58.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.5e-58 230.3 169 72.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.5e-58 229.6 189 67.2
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.5e-58 229.6 242 58.7
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 4.3e-58 228.8 242 58.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-57 226.9 235 60.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.6e-57 226.9 182 68.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.1e-57 226.5 182 67.6
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.8e-57 226.1 271 52.8
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 2.8e-57 226.1 183 67.2
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 6.2e-57 224.9 236 58.5
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.1e-56 224.2 248 58.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.4e-56 223.8 186 66.7
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.4e-56 223.8 256 57.0
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.4e-56 223.8 237 57.8
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.8e-56 223.4 182 67.0
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.3e-56 223.0 184 67.9
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.0e-56 222.2 199 64.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 6.8e-56 221.5 237 57.0
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 8.9e-56 221.1 231 59.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.0e-55 219.9 182 67.6
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.0e-55 219.9 181 68.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 5.8e-55 218.4 234 58.1
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 5.8e-55 218.4 265 53.2
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 7.5e-55 218.0 244 56.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 9.9e-55 217.6 231 58.9
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.3e-54 217.2 185 64.9
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 4.1e-53 212.2 213 58.2
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.3e-51 207.2 252 52.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.7e-51 206.8 169 68.0
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.9e-50 203.4 151 71.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.6e-49 200.3 187 62.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.6e-49 199.1 184 64.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 1.4e-48 197.2 236 53.4
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 5.2e-48 195.3 182 60.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.2e-46 189.9 183 56.3
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 4.9e-46 188.7 307 45.3
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.4e-45 187.2 180 59.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.2e-44 184.1 251 51.4
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.1e-44 183.3 232 48.7
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.2e-39 167.5 182 52.2
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.4e-38 161.4 130 67.7
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.4e-37 160.6 193 53.9
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 3.0e-35 152.9 177 51.4
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.1e-34 151.0 195 49.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.2e-30 136.7 259 41.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-28 131.0 106 68.9
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.7e-28 129.8 106 67.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 3.0e-27 126.3 147 51.7
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.7e-27 124.8 106 65.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 7.4e-26 121.7 123 50.4
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.6e-25 120.6 95 67.4
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 1.5e-23 114.0 152 48.7
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 1.5e-23 114.0 130 47.7
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 5.8e-23 112.1 153 46.4
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.3e-22 110.9 105 56.2
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 3.8e-22 109.4 216 41.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.1e-21 107.8 189 39.7
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.5e-21 105.5 74 71.6
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 9.3e-21 104.8 97 60.8
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 7.9e-20 101.7 211 36.0
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.3e-19 100.9 246 35.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 6.7e-19 98.6 255 32.2
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 8.7e-19 98.2 253 32.8
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.5e-18 96.7 76 67.1
Ah.12g058210 Amaranthus hybridus HOM05D005346 ORTHO05D007051 3.3e-18 96.3 78 66.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 5.3e-16 89.0 209 34.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.5e-15 87.4 149 39.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.1e-10 71.2 137 35.8
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 3.3e-10 69.7 122 38.5
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 5.9e-07 58.9 51 58.8


User provided reference genes

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