Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.7e-30 135.2 61 100.0
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.2e-29 131.0 61 98.4
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.3e-29 129.4 60 96.7
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.3e-29 129.4 60 96.7
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-28 129.0 59 98.3
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-28 129.0 59 98.3
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.1e-28 128.3 60 95.0
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.3e-27 125.6 59 96.6
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-26 122.1 59 94.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.3e-26 120.9 59 93.2
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.0e-19 99.4 60 73.3
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 4.8e-17 90.5 60 66.7
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 6.3e-17 90.1 60 60.0
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.1e-16 89.4 57 66.7
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 1.4e-16 89.0 60 63.3
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.8e-16 88.6 57 66.7
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 1.8e-16 88.6 57 66.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 1.8e-16 88.6 60 61.7
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 4.1e-16 87.4 57 66.7
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 5.3e-16 87.0 57 64.9
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 1.2e-15 85.9 60 58.3
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 1.2e-15 85.9 59 59.3
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-15 85.5 53 66.0
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.5e-15 85.5 53 66.0
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.5e-15 85.5 60 60.0
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.0e-15 85.1 60 58.3
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.0e-15 85.1 60 58.3
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 2.6e-15 84.7 57 63.2
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.6e-15 84.7 60 58.3
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 2.6e-15 84.7 57 59.6
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 3.4e-15 84.3 57 64.9
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 4.5e-15 84.0 57 64.9
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 4.5e-15 84.0 57 63.2
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 4.5e-15 84.0 57 63.2
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 4.5e-15 84.0 59 62.7
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 60.0
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 7.7e-15 83.2 57 59.6
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 7.7e-15 83.2 57 59.6
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 56.7
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 56.7
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 56.7
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 7.7e-15 83.2 59 61.0
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 7.7e-15 83.2 57 61.4
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 61.7
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 7.7e-15 83.2 60 56.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.0e-14 82.8 57 61.4
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 1.3e-14 82.4 60 55.0
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.3e-14 82.4 60 55.0
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 1.3e-14 82.4 57 57.9
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.7e-14 82.0 57 59.6
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 1.7e-14 82.0 57 57.9
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 2.2e-14 81.6 59 57.6
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 2.9e-14 81.3 57 61.4
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 2.9e-14 81.3 60 58.3
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 2.9e-14 81.3 57 57.9
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 2.9e-14 81.3 59 55.9
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.9e-14 81.3 57 61.4
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 57.9
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 59.6
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 57.9
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 57.9
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 57.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 57.9
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 3.8e-14 80.9 57 59.6
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 3.8e-14 80.9 60 61.7
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 5.0e-14 80.5 57 57.9
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 6.5e-14 80.1 60 58.3
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 6.5e-14 80.1 59 57.6
AUR62038391 Chenopodium quinoa HOM05D004267 ORTHO05D005267 8.5e-14 79.7 40 92.5
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 8.5e-14 79.7 60 51.7
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 8.5e-14 79.7 60 58.3
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 8.5e-14 79.7 57 52.6
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.4e-13 79.0 57 54.4
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 1.4e-13 79.0 60 58.3
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 1.9e-13 78.6 57 52.6
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.9e-13 78.6 60 55.0
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.9e-13 78.6 57 59.6
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 1.9e-13 78.6 59 55.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 2.5e-13 78.2 60 56.7
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 2.5e-13 78.2 60 56.7
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 2.5e-13 78.2 60 56.7
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 2.5e-13 78.2 60 56.7
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 2.5e-13 78.2 59 49.2
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 3.2e-13 77.8 60 50.0
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 3.2e-13 77.8 57 54.4
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 3.2e-13 77.8 57 52.6
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 4.2e-13 77.4 57 56.1
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 4.2e-13 77.4 60 56.7
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 4.2e-13 77.4 60 56.7
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 4.2e-13 77.4 60 56.7
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 4.2e-13 77.4 60 56.7
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 5.5e-13 77.0 57 56.1
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 5.5e-13 77.0 57 56.1
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 5.5e-13 77.0 57 50.9
AUR62035772 Chenopodium quinoa HOM05D004267 ORTHO05D005267 7.2e-13 76.6 36 97.2
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 7.2e-13 76.6 60 51.7
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 9.4e-13 76.3 60 56.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 9.4e-13 76.3 60 56.7
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 9.4e-13 76.3 60 53.3
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 9.4e-13 76.3 60 53.3
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 9.4e-13 76.3 57 64.9
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 9.4e-13 76.3 57 50.9
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 9.4e-13 76.3 57 52.6
AUR62023968 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-12 75.9 36 97.2
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 1.6e-12 75.5 60 56.7
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 1.6e-12 75.5 57 54.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.1e-12 75.1 60 55.0
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 2.1e-12 75.1 60 55.0
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 2.1e-12 75.1 57 56.1
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 2.7e-12 74.7 57 56.1
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 2.7e-12 74.7 82 45.1
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.6e-12 74.3 57 57.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 4.6e-12 73.9 57 54.4
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 6.1e-12 73.6 81 46.9
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 1.4e-11 72.4 60 51.7
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 1.8e-11 72.0 57 57.9
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.8e-11 72.0 62 54.8
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 2.3e-11 71.6 60 51.7
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.3e-11 71.6 57 57.9
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 2.3e-11 71.6 60 51.7
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.3e-11 71.6 55 56.4
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 3.0e-11 71.2 50 58.0
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 3.9e-11 70.9 57 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 5.1e-11 70.5 60 53.3
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 6.7e-11 70.1 57 54.4
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 8.8e-11 69.7 57 56.1
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.1e-10 69.3 70 48.6
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 7.4e-10 66.6 49 57.1
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.2e-09 65.1 73 46.6
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 6.3e-09 63.5 64 48.4
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 1.8e-08 62.0 93 36.6
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 1.8e-08 62.0 57 49.1
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 4.1e-08 60.8 51 51.0
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.0e-07 58.5 51 49.0
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.6e-07 58.2 35 65.7
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 3.4e-07 57.8 57 45.6
AUR62002982 Chenopodium quinoa HOM05D000312 ORTHO05D002725 1.0e-06 56.2 27 85.2
AUR62042635 Chenopodium quinoa HOM05D018884 ORTHO05D000002 3.8e-06 54.3 23 95.7
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 3.8e-06 54.3 59 47.5


User provided reference genes

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