Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010494 Chenopodium quinoa HOM05D016442 ORTHO05D017253 2.2e-59 232.3 130 100.0
AUR62010495 Chenopodium quinoa HOM05D016442 ORTHO05D017253 2.2e-59 232.3 130 100.0
AUR62017408 Chenopodium quinoa HOM05D016442 ORTHO05D017253 1.2e-52 209.9 128 90.6
AUR62010493 Chenopodium quinoa HOM05D016442 ORTHO05D017253 2.0e-44 182.6 128 72.7
AUR62010496 Chenopodium quinoa HOM05D016442 ORTHO05D017253 1.7e-43 179.5 128 78.9
AUR62017409 Chenopodium quinoa HOM05D000220 ORTHO05D017253 4.1e-42 174.9 127 75.6
AUR62017410 Chenopodium quinoa HOM05D000220 ORTHO05D017253 4.1e-42 174.9 127 75.6
Ah.02g115780 Amaranthus hybridus HOM05D016442 ORTHO05D017253 3.4e-28 128.6 131 54.2
EL10Ac5g12600 Beta vulgaris HOM05D016442 ORTHO05D017253 3.1e-13 79.0 148 42.6
AUR62007497 Chenopodium quinoa HOM05D000220 ORTHO05D000141 1.4e-10 70.1 137 35.8
EL10Ac5g13046 Beta vulgaris HOM05D000220 ORTHO05D000141 2.7e-09 65.9 137 33.6
AUR62039951 Chenopodium quinoa HOM05D000220 ORTHO05D000141 4.6e-09 65.1 137 34.3
GSVIVG01001297001 Vitis vinifera HOM05D000220 ORTHO05D000141 6.0e-09 64.7 88 43.2
Solyc03g091030.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 7.8e-09 64.3 130 34.6
Solyc03g091035.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 7.8e-09 64.3 130 34.6
Carub.0006s3179 Capsella rubella HOM05D000220 ORTHO05D000141 1.7e-08 63.2 131 31.3
THA.LOC104824962 Tarenaya hassleriana HOM05D000220 ORTHO05D000141 1.7e-08 63.2 136 33.1
Solyc03g093050.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 2.3e-08 62.8 130 33.8
Solyc03g091000.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 3.0e-08 62.4 130 34.6
Ah.02g127460 Amaranthus hybridus HOM05D016442 ORTHO05D061200 5.1e-08 61.6 92 42.4
Carub.0006s3181 Capsella rubella HOM05D000220 ORTHO05D000141 5.1e-08 61.6 131 30.5
Haze_02672 Corylus avellana HOM05D000220 ORTHO05D000141 8.7e-08 60.8 107 32.7
Solyc03g090990.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 8.7e-08 60.8 130 33.8
Solyc03g091020.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 8.7e-08 60.8 130 33.8
Solyc03g093060.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 8.7e-08 60.8 130 33.8
CSS0013513 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 1.1e-07 60.5 153 28.8
Nitab4.5_0004059g0070 Nicotiana tabacum HOM05D000220 ORTHO05D000141 1.1e-07 60.5 130 31.5
Solyc03g091010.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 1.1e-07 60.5 130 33.8
HanXRQChr06g0164291 Helianthus annuus HOM05D000220 ORTHO05D000141 1.9e-07 59.7 154 31.2
Rhsim07G0106100 Rhododendron simsii HOM05D000220 ORTHO05D000141 2.5e-07 59.3 109 29.4
GSVIVG01001299001 Vitis vinifera HOM05D000220 ORTHO05D000141 2.5e-07 59.3 133 29.3
Ciclev10013074m.g Citrus clementina HOM05D000220 ORTHO05D000141 3.3e-07 58.9 106 31.1
Lsat_1_v5_gn_7_47621 Lactuca sativa HOM05D000220 ORTHO05D000141 3.3e-07 58.9 106 30.2
Zm00001eb430720 Zea mays HOM05D000220 ORTHO05D000141 4.3e-07 58.5 111 31.5
CANSAT56G4529 Cannabis sativa HOM05D000220 ORTHO05D000141 5.6e-07 58.2 106 31.1
CsaV3_3G002880 Cucumis sativus L. HOM05D000220 ORTHO05D000141 5.6e-07 58.2 110 30.9
Nitab4.5_0000312g0300 Nicotiana tabacum HOM05D000220 ORTHO05D000141 5.6e-07 58.2 152 28.9
Nitab4.5_0003983g0030 Nicotiana tabacum HOM05D000220 ORTHO05D000141 5.6e-07 58.2 105 34.3
Lsat_1_v5_gn_7_47721 Lactuca sativa HOM05D000220 ORTHO05D000141 7.3e-07 57.8 106 29.2
Zm00001eb000440 Zea mays HOM05D000220 ORTHO05D000141 7.3e-07 57.8 97 33.0
Zm00001eb071050 Zea mays HOM05D000220 ORTHO05D000141 7.3e-07 57.8 110 30.9
AT4G12545 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 9.6e-07 57.4 128 31.2
AT4G12550 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 9.6e-07 57.4 131 29.8
Lsat_1_v5_gn_6_59961 Lactuca sativa HOM05D000220 ORTHO05D000141 9.6e-07 57.4 106 33.0
RhsimUnG0212500 Rhododendron simsii HOM05D000220 ORTHO05D000141 9.6e-07 57.4 156 26.3
EL10Ac5g13037 Beta vulgaris HOM05D000220 ORTHO05D000141 1.3e-06 57.0 111 27.9
CSS0036665 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 1.3e-06 57.0 153 28.1
Nitab4.5_0004482g0050 Nicotiana tabacum HOM05D000220 ORTHO05D000141 1.3e-06 57.0 54 50.0
Nitab4.5_0004482g0080 Nicotiana tabacum HOM05D000220 ORTHO05D000141 1.3e-06 57.0 54 50.0
Os03g0103300 Oryza sativa ssp. japonica HOM05D000220 ORTHO05D000141 1.3e-06 57.0 97 30.9
Ah.12g056650 Amaranthus hybridus HOM05D000220 ORTHO05D000141 1.6e-06 56.6 112 28.6
Cfa011176 Carpinus fangiana HOM05D000220 ORTHO05D000141 1.6e-06 56.6 107 30.8
Cfa012752 Carpinus fangiana HOM05D000220 ORTHO05D000141 1.6e-06 56.6 56 42.9
Eucgr.C02759 Eucalyptus grandis HOM05D000220 ORTHO05D000141 1.6e-06 56.6 106 30.2
Lsat_1_v5_gn_6_60001 Lactuca sativa HOM05D000220 ORTHO05D000141 1.6e-06 56.6 106 32.1
Os06g0168700 Oryza sativa ssp. japonica HOM05D000220 ORTHO05D000141 1.6e-06 56.6 53 45.3
Sabra06G0006600 Salix brachista HOM05D000220 ORTHO05D000141 1.6e-06 56.6 106 32.1
Thecc.10G144900 Theobroma cacao HOM05D000220 ORTHO05D026200 1.6e-06 56.6 60 46.7
AT4G12470 Arabidopsis thaliana HOM05D000220 ORTHO05D000141 2.1e-06 56.2 65 38.5
CSS0006549 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 2.1e-06 56.2 153 28.1
CSS0030451 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 2.1e-06 56.2 153 28.1
CiPaw.12G108200 Carya illinoinensis HOM05D000220 ORTHO05D000141 2.1e-06 56.2 149 26.8
Ciclev10012789m.g Citrus clementina HOM05D000220 ORTHO05D000141 2.1e-06 56.2 106 31.1
Haze_07876 Corylus avellana HOM05D000220 ORTHO05D000141 2.1e-06 56.2 147 28.6
DCAR_008481 Daucus carota HOM05D000220 ORTHO05D000141 2.1e-06 56.2 111 28.8
Oeu033953.1 Olea europaea HOM05D000220 ORTHO05D000141 2.1e-06 56.2 110 30.0
Peaxi162Scf00002g00121 Petunia axillaris HOM05D000220 ORTHO05D000141 2.1e-06 56.2 149 27.5
PGSC0003DMG400013806 Solanum tuberosum HOM05D000220 ORTHO05D000141 2.1e-06 56.2 148 27.0
Thecc.01G381700 Theobroma cacao HOM05D000220 ORTHO05D000141 2.1e-06 56.2 107 29.9
Aqoxy2G01482 Aquilegia oxysepala HOM05D000220 ORTHO05D000141 2.8e-06 55.8 137 29.2
CSS0006633 Camellia sinensis var. sinensis HOM05D000127 ORTHO05D000243 2.8e-06 55.8 92 33.7
Lsat_1_v5_gn_6_51880 Lactuca sativa HOM05D000220 ORTHO05D000141 2.8e-06 55.8 105 32.4
Lsat_1_v5_gn_6_51900 Lactuca sativa HOM05D000220 ORTHO05D000141 2.8e-06 55.8 105 32.4
PSO824G0016 Papaver somniferum HOM05D000220 ORTHO05D304190 2.8e-06 55.8 98 31.6
QL04p038969 Quercus lobata HOM05D000220 ORTHO05D000141 2.8e-06 55.8 106 31.1
QL05p024659 Quercus lobata HOM05D000220 ORTHO05D000141 2.8e-06 55.8 110 30.0
Solyc06g060640.1 Solanum lycopersicum HOM05D000220 ORTHO05D000141 2.8e-06 55.8 148 27.0
Atru.chr6.1206 Acer truncatum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 89 36.0
Aa31LG9G10140 Aethionema arabicum HOM05D000220 ORTHO05D000141 3.6e-06 55.5 63 39.7
Carub.0006s3163 Capsella rubella HOM05D000220 ORTHO05D000141 3.6e-06 55.5 64 40.6
SGA_v2.0_scaffold146G36160 Striga asiatica HOM05D000220 ORTHO05D000141 3.6e-06 55.5 65 41.5
Aqoxy7G00714 Aquilegia oxysepala HOM05D000220 ORTHO05D000141 4.8e-06 55.1 137 27.7
MSTRG.12080 Avicennia marina HOM05D000220 ORTHO05D000141 4.8e-06 55.1 100 33.0
MSTRG.25532 Avicennia marina HOM05D000220 ORTHO05D000141 4.8e-06 55.1 96 33.3
CSS0039285 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 4.8e-06 55.1 106 29.2
Ca_25931_v3 Cicer arietinum L. HOM05D000220 ORTHO05D000141 4.8e-06 55.1 107 29.0
Potri.006G008300 Populus trichocarpa HOM05D000220 ORTHO05D000141 4.8e-06 55.1 106 34.9
PGR031G0849 Punica granatum HOM05D000220 ORTHO05D000141 4.8e-06 55.1 106 29.2
QL04p039152 Quercus lobata HOM05D000220 ORTHO05D000141 4.8e-06 55.1 106 31.1
Sabra06G0006500 Salix brachista HOM05D000220 ORTHO05D000141 4.8e-06 55.1 106 31.1
Sp7g20540 Schrenkiella parvula HOM05D000220 ORTHO05D000141 4.8e-06 55.1 110 30.9
Solyc08g078870.3 Solanum lycopersicum HOM05D000220 ORTHO05D000141 4.8e-06 55.1 54 50.0
Thecc.10G145000 Theobroma cacao HOM05D000220 ORTHO05D026200 4.8e-06 55.1 76 42.1
Zm00001eb429540 Zea mays HOM05D000220 ORTHO05D000141 4.8e-06 55.1 152 28.9
CSS0012496 Camellia sinensis var. sinensis HOM05D000220 ORTHO05D000141 6.2e-06 54.7 106 30.2
CAN.G1227.8 Capsicum annuum HOM05D000220 ORTHO05D000141 6.2e-06 54.7 97 28.9
Ciclev10011810m.g Citrus clementina HOM05D000220 ORTHO05D152541 6.2e-06 54.7 107 29.0
Duzib133G1245 Durio zibethinus HOM05D000220 ORTHO05D000141 6.2e-06 54.7 108 29.6
Duzib138G1385 Durio zibethinus HOM05D000220 ORTHO05D000141 6.2e-06 54.7 105 30.5
Nitab4.5_0003983g0070 Nicotiana tabacum HOM05D000220 ORTHO05D000141 6.2e-06 54.7 54 48.1
Oeu006285.1 Olea europaea HOM05D000220 ORTHO05D000141 6.2e-06 54.7 100 33.0
PSO824G0004 Papaver somniferum HOM05D000220 ORTHO05D305652 6.2e-06 54.7 98 30.6
Peaxi162Scf00002g00047 Petunia axillaris HOM05D000220 ORTHO05D000141 6.2e-06 54.7 54 48.1
Peaxi162Scf00002g00048 Petunia axillaris HOM05D000220 ORTHO05D000141 6.2e-06 54.7 54 48.1
Peaxi162Scf00241g00027 Petunia axillaris HOM05D000220 ORTHO05D000141 6.2e-06 54.7 97 33.0
Peaxi162Scf00241g00032 Petunia axillaris HOM05D000220 ORTHO05D000141 6.2e-06 54.7 97 33.0
Peaxi162Scf00241g10024 Petunia axillaris HOM05D000220 ORTHO05D000141 6.2e-06 54.7 97 33.0
PGR031G3466 Punica granatum HOM05D000220 ORTHO05D000141 6.2e-06 54.7 140 25.0
Sp6g05010 Schrenkiella parvula HOM05D000220 ORTHO05D000141 6.2e-06 54.7 125 27.2
SpUn0055_0050 Schrenkiella parvula HOM05D000220 ORTHO05D000141 6.2e-06 54.7 125 27.2
PGSC0003DMG400004736 Solanum tuberosum HOM05D000220 ORTHO05D000141 6.2e-06 54.7 54 48.1
CAN.G1337.22 Capsicum annuum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 64 43.8
AUR62007496 Chenopodium quinoa HOM05D000220 ORTHO05D000141 8.1e-06 54.3 98 29.6
DCAR_006818 Daucus carota HOM05D000220 ORTHO05D000141 8.1e-06 54.3 106 33.0
Eucgr.D02488 Eucalyptus grandis HOM05D000220 ORTHO05D000141 8.1e-06 54.3 109 32.1
HanXRQChr06g0164301 Helianthus annuus HOM05D000220 ORTHO05D000141 8.1e-06 54.3 106 29.2
Lsat_1_v5_gn_0_28581 Lactuca sativa HOM05D000220 ORTHO05D000141 8.1e-06 54.3 61 44.3
Nitab4.5_0000558g0080 Nicotiana tabacum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 97 33.0
Nitab4.5_0003983g0060 Nicotiana tabacum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 54 48.1
Nitab4.5_0004482g0070 Nicotiana tabacum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 54 48.1
PSO210G5443 Papaver somniferum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 109 28.4
PGSC0003DMG400004797 Solanum tuberosum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 54 48.1
PGSC0003DMG400036126 Solanum tuberosum HOM05D000220 ORTHO05D000141 8.1e-06 54.3 142 32.4
Thecc.10G143400 Theobroma cacao HOM05D000220 ORTHO05D026200 8.1e-06 54.3 60 45.0


User provided reference genes

Program Settings