Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.1e-269 931.8 476 100.0
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 3.4e-259 897.9 507 91.7
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 5.1e-239 830.9 484 88.8
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 1.6e-221 772.7 486 82.5
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 4.7e-176 621.7 412 75.7
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.7e-170 603.2 374 79.9
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 1.0e-167 594.0 407 74.7
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 4.0e-167 592.0 392 77.3
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.5e-166 590.1 394 74.6
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 2.0e-166 589.7 418 72.0
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 2.0e-166 589.7 397 76.3
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 5.7e-166 588.2 392 77.0
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 3.1e-164 582.4 391 76.0
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.2e-163 580.5 457 66.5
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 2.0e-163 579.7 394 75.6
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 8.5e-162 574.3 395 74.7
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.9e-161 573.2 391 73.9
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.2e-161 572.0 410 70.7
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 7.2e-161 571.2 439 67.4
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 6.1e-160 568.2 403 70.0
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 3.0e-159 565.8 390 72.3
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.0e-159 565.5 467 64.7
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 5.2e-159 565.1 482 62.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 8.8e-159 564.3 390 72.6
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.2e-158 563.9 464 63.8
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.2e-158 563.9 395 73.2
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 9.8e-158 560.8 374 73.8
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 9.8e-158 560.8 404 70.0
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.7e-157 560.1 388 72.9
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 1.7e-157 560.1 373 75.6
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.8e-157 559.3 473 63.6
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 2.8e-157 559.3 410 70.2
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 4.9e-157 558.5 391 71.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 4.9e-157 558.5 391 71.6
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 6.3e-157 558.1 380 73.4
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 8.3e-157 557.8 392 73.7
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.1e-156 557.4 391 72.1
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.8e-156 556.6 410 68.8
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 3.1e-156 555.8 379 72.0
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 5.4e-156 555.1 395 73.7
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.0e-155 553.1 440 64.5
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-154 550.8 469 62.9
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 1.3e-154 550.4 409 68.5
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 3.8e-154 548.9 411 68.9
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 6.6e-154 548.1 475 62.3
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.9e-153 546.6 405 70.9
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 3.3e-153 545.8 386 72.8
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 7.3e-153 544.7 479 61.6
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 9.5e-153 544.3 372 72.6
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.2e-152 543.9 392 69.6
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 3.6e-152 542.3 407 69.0
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 4.7e-152 542.0 424 67.9
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 4.7e-152 542.0 358 76.3
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 8.0e-152 541.2 407 69.3
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 1.0e-151 540.8 460 61.3
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.0e-151 540.8 390 71.5
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.0e-151 540.8 384 71.4
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 1.4e-151 540.4 480 61.0
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 6.8e-151 538.1 394 70.8
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.5e-150 537.0 462 62.8
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.7e-149 533.5 511 58.1
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.9e-149 532.7 387 71.3
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 3.7e-149 532.3 508 57.9
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.2e-148 529.3 376 71.0
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 2.0e-147 526.6 390 69.7
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 2.0e-147 526.6 392 67.9
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 4.6e-147 525.4 423 66.2
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.6e-147 525.4 487 60.2
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 7.8e-147 524.6 371 71.4
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 1.0e-146 524.2 374 69.5
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 1.9e-145 520.0 358 74.3
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 9.5e-145 517.7 367 71.9
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.6e-144 516.9 485 57.9
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.4e-142 508.8 330 77.6
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 2.2e-141 506.5 387 66.9
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 2.2e-141 506.5 330 77.3
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 1.1e-140 504.2 381 68.0
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 2.4e-140 503.1 467 59.1
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 6.6e-138 495.0 475 57.7
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 8.6e-138 494.6 391 65.2
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 2.6e-134 483.0 409 61.6
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 6.4e-133 478.4 397 62.7
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 6.4e-133 478.4 373 65.1
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 4.0e-127 459.1 405 61.2
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 1.2e-126 457.6 367 62.1
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 3.4e-126 456.1 438 58.4
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 5.8e-126 455.3 373 63.0
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 4.9e-125 452.2 457 55.6
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 1.1e-124 451.1 412 60.2
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 2.1e-123 446.8 427 59.3
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.3e-122 444.1 323 71.2
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 1.7e-122 443.7 428 59.1
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 3.0e-122 443.0 395 62.0
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 3.9e-122 442.6 369 62.3
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.1e-119 434.5 397 61.5
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 2.0e-118 430.3 410 59.3
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 9.6e-113 411.4 398 57.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.3e-112 411.0 398 58.3
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 5.8e-110 402.1 425 54.6
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 2.4e-108 396.7 422 55.0
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 2.4e-108 396.7 422 55.0
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 2.7e-107 393.3 400 57.5
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 2.7e-107 393.3 400 57.5
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 4.3e-105 386.0 383 55.9
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 2.5e-97 360.1 355 56.6
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.1e-89 334.7 234 72.6
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 6.9e-87 325.5 479 46.1
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.6e-83 312.8 239 69.5
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 3.1e-79 300.1 215 68.4
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 2.2e-72 277.3 409 40.3
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 3.2e-60 236.9 159 75.5
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 2.6e-57 227.3 420 35.7
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.7e-56 223.4 385 36.4
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 5.0e-53 213.0 139 76.3
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.1e-44 185.3 419 35.6
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-42 178.3 124 72.6
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 1.4e-42 178.3 126 70.6
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 5.7e-41 172.9 109 76.1
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 6.3e-40 169.5 152 56.6
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 1.9e-36 157.9 235 44.7
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 2.5e-36 157.5 120 63.3
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 9.2e-31 139.0 334 30.5
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 1.6e-27 128.3 201 39.8
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 4.1e-23 113.6 119 53.8
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.2e-22 112.1 78 69.2
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 9.5e-20 102.4 75 66.7
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 2.1e-11 74.7 236 27.1
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.7e-11 73.6 210 29.5
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 1.8e-10 71.6 259 26.3
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 5.8e-09 66.6 421 24.9
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 5.8e-09 66.6 378 22.8
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 9.9e-09 65.9 447 23.0
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 1.3e-08 65.5 359 24.5
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 1.7e-08 65.1 392 23.7
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.9e-08 64.3 74 47.3
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 2.9e-08 64.3 369 23.6
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 3.8e-08 63.9 285 23.9
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 3.8e-08 63.9 443 22.3
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 3.8e-08 63.9 378 23.5
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 3.8e-08 63.9 279 24.4
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 3.8e-08 63.9 447 23.3
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 4.9e-08 63.5 352 22.7
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 6.4e-08 63.2 406 23.9
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 8.4e-08 62.8 269 24.9
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 1.1e-07 62.4 383 23.0
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 1.4e-07 62.0 269 24.5
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 1.4e-07 62.0 279 24.0
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 1.4e-07 62.0 426 24.2
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 1.4e-07 62.0 402 24.1
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 1.9e-07 61.6 355 22.0
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 1.9e-07 61.6 401 23.4
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 2.4e-07 61.2 395 23.3
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 2.4e-07 61.2 279 24.0
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 2.4e-07 61.2 454 22.9
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 3.2e-07 60.8 401 21.7
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 3.2e-07 60.8 284 25.0
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 3.2e-07 60.8 255 25.1
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 3.2e-07 60.8 284 23.9
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 3.2e-07 60.8 283 24.4
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 3.2e-07 60.8 278 23.7
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 4.1e-07 60.5 416 24.3
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 4.1e-07 60.5 372 22.8
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 5.4e-07 60.1 285 23.2
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 5.4e-07 60.1 280 23.9
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 5.4e-07 60.1 396 23.5
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 5.4e-07 60.1 284 24.3
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 7.1e-07 59.7 406 23.4
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 1.2e-06 58.9 285 24.2
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 1.2e-06 58.9 394 21.3
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 1.6e-06 58.5 435 22.1
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 2.1e-06 58.2 294 23.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 2.7e-06 57.8 279 24.7
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 2.7e-06 57.8 279 24.7
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 2.7e-06 57.8 390 23.3
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 3.5e-06 57.4 288 23.3
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 3.5e-06 57.4 347 21.9
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 4.6e-06 57.0 278 24.1
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 4.6e-06 57.0 398 21.6


User provided reference genes

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