Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010439 Chenopodium quinoa HOM05D005091 ORTHO05D006047 3.7e-213 744.6 370 100.0
AUR62016783 Chenopodium quinoa HOM05D005091 ORTHO05D006047 2.0e-198 695.7 419 85.7
EL10Ac9g21684 Beta vulgaris HOM05D005091 ORTHO05D006047 3.3e-177 625.2 400 79.0
Ah.01g019050 Amaranthus hybridus HOM05D005091 ORTHO05D006047 4.8e-168 594.7 401 74.1
GSVIVG01024219001 Vitis vinifera HOM05D005091 ORTHO05D006047 1.4e-143 513.5 377 69.2
CSS0022719 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.5e-142 510.0 385 67.8
TAR625G0679 Trochodendron aralioides HOM05D005091 ORTHO05D006047 2.0e-142 509.6 381 67.5
CSS0014539 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 5.8e-142 508.1 385 67.5
Atru.chr5.3102 Acer truncatum HOM05D005091 ORTHO05D006047 1.7e-141 506.5 364 69.8
Lj5C193G6 Lonicera japonica HOM05D005091 ORTHO05D006047 2.9e-141 505.8 342 73.1
Dinv42028 Davidia involucrata HOM05D005091 ORTHO05D006047 3.8e-141 505.4 355 70.7
Actinidia02234 Actinidia chinensis HOM05D005091 ORTHO05D006047 6.5e-141 504.6 358 69.3
Hma1.2p1_0066F.1_g036020 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 8.4e-141 504.2 385 64.9
Duzib132G0651 Durio zibethinus HOM05D005091 ORTHO05D006047 1.3e-138 496.9 359 68.5
MBI01_g12681_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 3.0e-138 495.7 368 66.8
COL.COLO4_26004 Corchorus olitorius HOM05D005091 ORTHO05D006047 3.9e-138 495.4 390 65.9
vmacro17453 Vaccinium macrocarpon HOM05D005091 ORTHO05D006047 6.7e-138 494.6 368 66.8
Thecc.02G079100 Theobroma cacao HOM05D005091 ORTHO05D006047 8.7e-138 494.2 360 70.0
Aqoxy6G01233 Aquilegia oxysepala HOM05D005091 ORTHO05D006047 3.3e-137 492.3 355 68.7
TWI79G0003 Tripterygium wilfordii HOM05D005091 ORTHO05D006047 7.4e-137 491.1 359 67.7
CSS0020327 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.7e-137 490.7 382 66.0
Rhsim05G0070500 Rhododendron simsii HOM05D005091 ORTHO05D006047 9.7e-137 490.7 374 65.8
CSS0037916 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.3e-136 490.3 379 65.7
Nitab4.5_0009512g0060 Nicotiana tabacum HOM05D005091 ORTHO05D006047 1.3e-136 490.3 380 64.7
Nn5g29154 Nelumbo nucifera HOM05D005091 ORTHO05D006047 1.6e-136 490.0 369 66.1
Potri.004G160000 Populus trichocarpa HOM05D005091 ORTHO05D006047 1.6e-136 490.0 359 68.5
Ciclev10028263m.g Citrus clementina HOM05D005091 ORTHO05D006047 3.7e-136 488.8 360 68.9
Gorai.002G004900 Gossypium raimondii HOM05D005091 ORTHO05D006047 3.1e-135 485.7 358 67.3
Sopen01g052220 Solanum pennellii HOM05D005091 ORTHO05D006047 3.1e-135 485.7 386 64.8
PGSC0003DMG400030963 Solanum tuberosum HOM05D005091 ORTHO05D006047 3.1e-135 485.7 386 65.0
Nitab4.5_0005919g0020 Nicotiana tabacum HOM05D005091 ORTHO05D006047 4.1e-135 485.3 380 64.2
Cc02_g17150 Coffea canephora HOM05D005091 ORTHO05D006047 9.0e-135 484.2 380 65.3
PGR042G2402 Punica granatum HOM05D005091 ORTHO05D006047 1.2e-134 483.8 389 63.0
Eucgr.G01705 Eucalyptus grandis HOM05D005091 ORTHO05D006047 1.5e-134 483.4 386 65.3
Gohir.A01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.5e-134 483.4 359 67.7
Gohir.D01G004000 Gossypium hirsutum HOM05D005091 ORTHO05D006047 1.5e-134 483.4 358 66.8
Oeu041611.2 Olea europaea HOM05D005091 ORTHO05D006047 3.4e-134 482.3 377 63.4
PSO675G3543 Papaver somniferum HOM05D005091 ORTHO05D006047 7.7e-134 481.1 357 69.5
Cpa.g.sc150.55 Carica papaya HOM05D005091 ORTHO05D006047 1.0e-133 480.7 385 64.7
Ca_23899_v3 Cicer arietinum L. HOM05D005091 ORTHO05D006047 1.0e-133 480.7 359 68.2
PSO541G2662 Papaver somniferum HOM05D005091 ORTHO05D006047 1.0e-133 480.7 357 69.5
Manes.12G155700 Manihot esculenta HOM05D005091 ORTHO05D006047 1.3e-133 480.3 381 65.4
Prupe.8G089300 Prunus persica HOM05D005091 ORTHO05D006047 1.7e-133 479.9 357 66.4
MELO3C023337.2 Cucumis melo HOM05D005091 ORTHO05D006047 2.9e-133 479.2 383 65.3
QL11p045411 Quercus lobata HOM05D005091 ORTHO05D006047 5.0e-133 478.4 393 64.4
CsaV3_2G015120 Cucumis sativus L. HOM05D005091 ORTHO05D006047 1.4e-132 476.9 383 64.8
Hund06247 Selenicereus undatus HOM05D005091 ORTHO05D006047 4.2e-132 475.3 438 59.8
MD05G1059400 Malus domestica HOM05D005091 ORTHO05D006047 7.2e-132 474.6 358 66.5
CiPaw.05G070800 Carya illinoinensis HOM05D005091 ORTHO05D006047 2.1e-131 473.0 377 65.0
Lalb_Chr03g0034131 Lupinus albus HOM05D005091 ORTHO05D006047 3.6e-131 472.2 359 65.7
Sabra04G0107000 Salix brachista HOM05D005091 ORTHO05D006047 6.1e-131 471.5 387 63.8
Lj3g0010610 Lotus japonicus HOM05D005091 ORTHO05D006047 7.9e-131 471.1 385 63.6
RcHm_v2.0_Chr6g0266641 Rosa chinensis HOM05D005091 ORTHO05D006047 1.0e-130 470.7 358 65.9
THA.LOC104807298 Tarenaya hassleriana HOM05D005091 ORTHO05D006047 1.0e-130 470.7 359 67.1
CANSAT11G2456 Cannabis sativa HOM05D005091 ORTHO05D006047 2.3e-130 469.5 360 65.3
Psat4g148720 Pisum sativum HOM05D005091 ORTHO05D006047 6.7e-130 468.0 378 62.7
CSS0039319 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.1e-129 467.2 374 65.0
Thhalv10022667m.g Eutrema salsugineum HOM05D005091 ORTHO05D006047 1.5e-129 466.8 375 63.7
A07p04510 Brassica napus HOM05D005091 ORTHO05D006047 2.0e-129 466.5 376 64.1
MSTRG.16832 Avicennia marina HOM05D005091 ORTHO05D006047 2.5e-129 466.1 379 62.8
BcaB03g16352 Brassica carinata HOM05D005091 ORTHO05D006047 2.5e-129 466.1 375 63.5
Sp3g29690 Schrenkiella parvula HOM05D005091 ORTHO05D006047 3.3e-129 465.7 375 64.0
AL3G52590 Arabidopsis lyrata HOM05D005091 ORTHO05D006047 4.3e-129 465.3 369 64.0
CSS0016397 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 9.7e-129 464.2 380 63.9
CiPaw.06G131700 Carya illinoinensis HOM05D005091 ORTHO05D006047 9.7e-129 464.2 385 62.9
Migut.B00202 Erythranthe guttata HOM05D005091 ORTHO05D006047 1.7e-128 463.4 386 62.7
BcaC06g36149 Brassica carinata HOM05D005091 ORTHO05D006047 2.2e-128 463.0 375 64.0
C07p07220 Brassica napus HOM05D005091 ORTHO05D006047 2.2e-128 463.0 375 64.0
BolC7t41142H Brassica oleracea HOM05D005091 ORTHO05D006047 2.2e-128 463.0 375 64.0
Glyma.13G201900 Glycine max HOM05D005091 ORTHO05D006047 2.4e-127 459.5 362 65.7
Gohir.A04G124200 Gossypium hirsutum HOM05D005091 ORTHO05D006047 2.4e-127 459.5 357 65.5
arahy.Tifrunner.gnm1.ann1.PP2YAD Arachis hypogaea HOM05D005091 ORTHO05D006047 3.1e-127 459.1 359 64.3
AT2G16405 Arabidopsis thaliana HOM05D005091 ORTHO05D006047 4.1e-127 458.8 383 62.1
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.2e-126 457.2 324 69.4
TPR.G1894 Trifolium pratense HOM05D005091 ORTHO05D006047 1.2e-126 457.2 359 65.2
Gorai.012G154700 Gossypium raimondii HOM05D005091 ORTHO05D006047 1.5e-126 456.8 357 65.3
Carub.0003s3018 Capsella rubella HOM05D005091 ORTHO05D006047 2.6e-126 456.1 378 63.0
Glyma.12G236400 Glycine max HOM05D005091 ORTHO05D006047 2.6e-126 456.1 362 65.5
SalBow6G4139 Salvia bowleyana HOM05D005091 ORTHO05D006047 2.6e-126 456.1 378 62.4
Gohir.D04G166300 Gossypium hirsutum HOM05D005091 ORTHO05D006047 4.5e-126 455.3 357 65.0
Sed0016950 Sechium edule HOM05D005091 ORTHO05D006047 1.7e-125 453.4 380 62.4
Medtr8g037340 Medicago truncatula HOM05D005091 ORTHO05D006047 5.0e-125 451.8 388 60.1
BraA07t28242Z Brassica rapa HOM05D005091 ORTHO05D006047 6.5e-125 451.4 382 61.5
Phvul.011G210700 Phaseolus vulgaris HOM05D005091 ORTHO05D006047 8.5e-125 451.1 360 63.6
DCAR_004295 Daucus carota HOM05D005091 ORTHO05D006047 1.1e-124 450.7 362 63.8
MD10G1067500 Malus domestica HOM05D005091 ORTHO05D006047 1.1e-124 450.7 357 64.4
Aa31LG8G13770 Aethionema arabicum HOM05D005091 ORTHO05D006047 2.5e-124 449.5 417 57.8
Hma1.2p1_0066F.1_g036030 Hydrangea macrophylla HOM05D005091 ORTHO05D006047 5.5e-124 448.4 318 67.6
Oeu004806.3 Olea europaea HOM05D005091 ORTHO05D006047 1.6e-123 446.8 437 54.9
arahy.Tifrunner.gnm1.ann1.6QR9E7 Arachis hypogaea HOM05D005091 ORTHO05D006047 4.7e-123 445.3 386 59.8
HanXRQChr04g0127771 Helianthus annuus HOM05D005091 ORTHO05D006047 7.9e-123 444.5 361 60.7
VMungo1127G0930 Vigna mungo HOM05D005091 ORTHO05D006047 7.9e-123 444.5 361 63.2
ECA236G1753 Erigeron canadensis HOM05D005091 ORTHO05D006047 1.8e-122 443.4 361 61.2
ATR0665G578 Amborella trichopoda HOM05D005091 ORTHO05D006047 2.3e-122 443.0 364 61.5
Lsat_1_v5_gn_7_91761 Lactuca sativa HOM05D005091 ORTHO05D006047 1.8e-119 433.3 391 57.8
Lsat_1_v5_gn_9_107760 Lactuca sativa HOM05D005091 ORTHO05D006047 4.5e-118 428.7 373 58.2
unitig_21.g20796 Utricularia gibba HOM05D005091 ORTHO05D006047 4.5e-118 428.7 379 58.8
FAN15G1732 Fragaria x ananassa HOM05D005091 ORTHO05D006047 1.7e-117 426.8 396 56.8
FAN24G2910 Fragaria x ananassa HOM05D005091 ORTHO05D006047 3.8e-117 425.6 398 56.8
FvH4_2g09910 Fragaria vesca HOM05D005091 ORTHO05D006047 5.0e-117 425.2 395 57.0
FAN20G0404 Fragaria x ananassa HOM05D005091 ORTHO05D006047 5.0e-117 425.2 398 56.5
TAR381G0064 Trochodendron aralioides HOM05D005091 ORTHO05D006047 3.3e-113 412.5 318 66.0
SEGI_12567 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 8.2e-112 407.9 357 58.5
HPP92_010449 Vanilla planifolia HOM05D005091 ORTHO05D006047 1.2e-110 404.1 381 56.2
ClCG11G004080 Citrullus lanatus HOM05D005091 ORTHO05D006047 2.2e-109 399.8 404 55.2
Haze_02317 Corylus avellana HOM05D005091 ORTHO05D006047 2.7e-107 392.9 396 53.5
Zm00001eb151660 Zea mays HOM05D005091 ORTHO05D006047 3.7e-104 382.5 373 55.8
CARHR106660 Cardamine hirsuta HOM05D005091 ORTHO05D006047 4.2e-100 369.0 282 66.7
Solyc01g110030.3 Solanum lycopersicum HOM05D005091 ORTHO05D006047 2.3e-98 363.2 279 67.4
Os01g0776400 Oryza sativa ssp. japonica HOM05D005091 ORTHO05D006047 4.0e-98 362.5 363 54.5
SGA_v2.0_scaffold58G20494 Striga asiatica HOM05D005091 ORTHO05D006047 5.2e-98 362.1 332 58.7
Peaxi162Scf00016g00337 Petunia axillaris HOM05D005091 ORTHO05D006047 4.1e-95 352.4 245 71.0
Mapoly0099s0024 Marchantia polymorpha HOM05D005091 ORTHO05D006047 5.9e-94 348.6 358 50.8
CDE06G1738 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 2.1e-83 313.5 262 61.1
Potri.009G121100 Populus trichocarpa HOM05D005091 ORTHO05D006047 2.1e-83 313.5 332 55.1
HPP92_010256 Vanilla planifolia HOM05D005091 ORTHO05D006047 2.1e-83 313.5 245 62.0
RcHm_v2.0_Chr6g0266811 Rosa chinensis HOM05D005091 ORTHO05D006047 4.0e-82 309.3 242 64.9
Pp3c21_5350 Physcomitrium patens HOM05D005091 ORTHO05D006047 1.1e-74 284.6 357 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1521 Anthoceros agrestis HOM05D005091 ORTHO05D006047 2.6e-73 280.0 380 42.6
Dinv42026 Davidia involucrata HOM05D000284 ORTHO05D006047 3.2e-71 273.1 195 71.3
SMO232G0022 Selaginella moellendorffii HOM05D005091 ORTHO05D006047 2.1e-70 270.4 333 45.6
CSS0007587 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.3e-35 154.8 97 74.2
CDE06G2285 Ceratophyllum demersum HOM05D005091 ORTHO05D006047 3.1e-34 150.2 97 71.1
CBR_g20107 Chara braunii HOM05D005091 ORTHO05D006047 1.0e-32 145.2 359 31.5
SEGI_20344 Sequoiadendron giganteum HOM05D005091 ORTHO05D006047 5.5e-31 139.4 133 52.6
Peaxi162Scf00016g00336 Petunia axillaris HOM05D005091 ORTHO05D006047 5.9e-25 119.4 91 62.6
SalBow6G1040 Salvia bowleyana HOM05D005091 ORTHO05D006047 5.5e-23 112.8 237 35.4
CSS0046659 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.0e-21 108.6 66 74.2
MBI03_g43429_MAGBIO Magnolia biondii HOM05D005091 ORTHO05D006047 8.5e-16 89.0 59 69.5
CSS0018321 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 1.1e-15 88.6 49 77.6
CSS0018700 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 2.5e-15 87.4 49 75.5
TAR381G0878 Trochodendron aralioides HOM05D005091 ORTHO05D006047 1.6e-14 84.7 53 81.1
A07p25650 Brassica napus HOM05D005091 ORTHO05D006047 2.3e-13 80.9 124 45.2
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 6.7e-13 79.3 55 61.8
HPP92_010172 Vanilla planifolia HOM05D005091 ORTHO05D006047 6.3e-11 72.8 116 37.9
CSS0048156 Camellia sinensis var. sinensis HOM05D005091 ORTHO05D006047 4.1e-10 70.1 77 50.6
A08p00070 Brassica napus HOM05D005091 ORTHO05D006047 6.9e-10 69.3 161 34.8
Cre06.g278205 Chlamydomonas reinhardtii HOM05D005091 ORTHO05D006047 6.9e-10 69.3 250 28.0
BcaC06g35115 Brassica carinata HOM05D005091 ORTHO05D006047 4.5e-09 66.6 125 40.0
C07p19660 Brassica napus HOM05D005091 ORTHO05D006047 1.4e-07 61.6 82 50.0
BolC7t42483H Brassica oleracea HOM05D005091 ORTHO05D006047 1.4e-07 61.6 82 50.0
Cfa027163 Carpinus fangiana HOM05D002303 ORTHO05D006504 2.5e-07 60.8 150 24.7
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 7.2e-07 59.3 93 30.1
Sp6g16260 Schrenkiella parvula HOM05D000645 ORTHO05D000494 7.2e-07 59.3 137 31.4
BcaB08g35775 Brassica carinata HOM05D000645 ORTHO05D000494 1.2e-06 58.5 137 31.4
AL8G29430 Arabidopsis lyrata HOM05D000645 ORTHO05D000494 1.6e-06 58.2 128 31.2
AT5G54200 Arabidopsis thaliana HOM05D000645 ORTHO05D000494 1.6e-06 58.2 128 31.2
BcaB01g04283 Brassica carinata HOM05D000645 ORTHO05D000494 1.6e-06 58.2 137 32.1
CARHR267420 Cardamine hirsuta HOM05D000645 ORTHO05D000494 1.6e-06 58.2 120 31.7
Carub.0008s1452 Capsella rubella HOM05D000645 ORTHO05D000494 2.1e-06 57.8 128 31.2
PRCOL_00003847 Prasinoderma coloniale HOM05D005091 ORTHO05D006047 3.6e-06 57.0 152 26.3
BcaC04g20361 Brassica carinata HOM05D000645 ORTHO05D000494 4.7e-06 56.6 116 32.8
BolC9t57323H Brassica oleracea HOM05D000645 ORTHO05D000494 4.7e-06 56.6 116 33.6
Os04g0678300 Oryza sativa ssp. japonica HOM05D000645 ORTHO05D000494 4.7e-06 56.6 110 30.0
Zm00001eb433820 Zea mays HOM05D000645 ORTHO05D000494 4.7e-06 56.6 110 30.0
Lj3g0010044 Lotus japonicus HOM05D000645 ORTHO05D000494 6.1e-06 56.2 154 26.6
A03p14770 Brassica napus HOM05D000645 ORTHO05D000494 7.9e-06 55.8 137 31.4
BraA03t10769Z Brassica rapa HOM05D000645 ORTHO05D000494 7.9e-06 55.8 137 31.4
Nn1g06632 Nelumbo nucifera HOM05D000645 ORTHO05D000494 7.9e-06 55.8 156 30.1


User provided reference genes

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