Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.3e-69 266.2 124 100.0
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.9e-69 265.0 124 99.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.5e-54 214.5 116 82.8
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 4.2e-52 208.0 105 91.4
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.6e-51 204.5 106 88.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 4.6e-51 204.5 106 88.7
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.5e-49 199.5 103 88.3
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.3e-49 198.4 116 77.6
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 8.2e-48 193.7 116 75.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.9e-45 185.3 116 73.3
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 3.8e-45 184.9 107 75.7
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 5.0e-45 184.5 116 74.1
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.0e-45 184.5 113 74.3
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.0e-45 184.5 113 74.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 6.5e-45 184.1 116 72.4
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.5e-44 182.2 120 69.2
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.5e-44 182.2 113 73.5
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.5e-44 182.2 113 74.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.2e-44 181.4 113 73.5
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 5.5e-44 181.0 104 75.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 5.5e-44 181.0 113 70.8
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.5e-44 181.0 113 73.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 5.5e-44 181.0 101 79.2
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 7.2e-44 180.6 106 74.5
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 7.2e-44 180.6 104 76.9
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 7.2e-44 180.6 104 75.0
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 7.2e-44 180.6 106 74.5
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.4e-44 180.3 113 72.6
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.2e-43 179.9 113 72.6
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 74.0
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 74.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 74.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 74.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 74.0
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.6e-43 179.5 104 75.0
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.6e-43 179.5 115 70.4
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 2.1e-43 179.1 113 72.6
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.1e-43 179.1 113 72.6
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.1e-43 179.1 113 71.7
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 2.7e-43 178.7 112 73.2
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 2.7e-43 178.7 103 76.7
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 3.6e-43 178.3 112 70.5
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 3.6e-43 178.3 116 70.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 4.6e-43 177.9 104 73.1
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 4.6e-43 177.9 104 73.1
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 4.6e-43 177.9 113 67.3
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.6e-43 177.9 104 76.0
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 6.1e-43 177.6 104 73.1
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 6.1e-43 177.6 104 73.1
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-43 177.2 104 73.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 7.9e-43 177.2 104 73.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 7.9e-43 177.2 104 73.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 7.9e-43 177.2 104 73.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 7.9e-43 177.2 104 73.1
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 7.9e-43 177.2 116 69.8
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.9e-43 177.2 114 70.2
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.0e-42 176.8 113 70.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.0e-42 176.8 113 70.8
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.0e-42 176.8 103 74.8
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.0e-42 176.8 116 69.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-42 176.8 103 74.8
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 1.4e-42 176.4 114 71.9
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 1.8e-42 176.0 98 79.6
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.8e-42 176.0 113 70.8
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.3e-42 175.6 115 69.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.3e-42 175.6 102 74.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.3e-42 175.6 104 74.0
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.3e-42 175.6 120 67.5
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 3.0e-42 175.3 112 72.3
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.0e-42 175.3 103 73.8
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 3.9e-42 174.9 113 69.9
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 3.9e-42 174.9 117 70.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 3.9e-42 174.9 112 73.2
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.1e-42 174.5 104 73.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 5.1e-42 174.5 113 69.9
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 5.1e-42 174.5 113 70.8
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 6.7e-42 174.1 113 69.9
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 6.7e-42 174.1 113 69.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.7e-42 174.1 103 74.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.8e-42 173.7 104 74.0
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 8.8e-42 173.7 104 73.1
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 8.8e-42 173.7 104 73.1
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 8.8e-42 173.7 116 69.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 8.8e-42 173.7 104 73.1
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-41 173.3 99 75.8
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.1e-41 173.3 113 69.0
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.5e-41 172.9 114 69.3
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.5e-41 172.9 115 67.0
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.5e-41 172.9 103 74.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.0e-41 172.6 104 73.1
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 2.0e-41 172.6 113 69.0
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 2.0e-41 172.6 107 73.8
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 2.0e-41 172.6 104 72.1
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.5e-41 172.2 104 73.1
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.5e-41 172.2 104 73.1
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.5e-41 172.2 116 68.1
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-41 171.8 101 76.2
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 3.3e-41 171.8 104 73.1
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.3e-41 171.8 106 71.7
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 3.3e-41 171.8 103 73.8
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.3e-41 171.4 104 72.1
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 4.3e-41 171.4 101 74.3
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 4.3e-41 171.4 103 69.9
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.7e-41 171.0 114 68.4
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 5.7e-41 171.0 104 71.2
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 7.4e-41 170.6 116 70.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 9.7e-41 170.2 116 69.8
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.3e-40 169.9 125 63.2
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 2.8e-40 168.7 98 78.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.2e-40 167.2 100 74.0
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.1e-39 166.8 104 69.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.0e-38 162.5 103 70.9
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 7.7e-38 160.6 102 68.6
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.0e-37 160.2 128 61.7
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.3e-37 159.8 139 54.7
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 1.7e-37 159.5 103 68.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 1.4e-36 156.4 101 69.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 4.2e-36 154.8 114 66.7
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 9.7e-33 143.7 88 71.6
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.3e-32 143.3 171 46.8
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.5e-30 134.8 104 63.5
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 7.7e-30 134.0 102 56.9
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.7e-29 132.9 82 70.7
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 2.9e-29 132.1 99 59.6
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.7e-27 125.6 104 53.8
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.1e-25 120.2 106 56.6
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 7.5e-25 117.5 104 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 8.2e-24 114.0 95 52.6
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 8.2e-24 114.0 60 81.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 2.7e-22 109.0 102 47.1
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 5.9e-22 107.8 119 46.2
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.7e-22 107.5 81 63.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.3e-21 106.7 96 49.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-20 102.4 105 46.7
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.2e-19 100.1 140 40.7
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.3e-18 95.9 59 71.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.2e-17 93.6 57 75.4
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 4.4e-17 91.7 49 77.6
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 4.4e-17 91.7 49 75.5
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 6.3e-16 87.8 55 70.9
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.4e-15 86.7 89 46.1
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 3.1e-15 85.5 52 75.0
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.1e-15 85.1 59 62.7
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-14 81.6 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 7.2e-12 74.3 47 63.8
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 7.2e-12 74.3 53 69.8
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 1.3e-08 63.5 87 36.8


User provided reference genes

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