Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010386 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.1e-44 183.0 94 100.0
AUR62016832 Chenopodium quinoa HOM05D007135 ORTHO05D008880 1.1e-44 183.0 94 100.0
EL10Ac9g21635 Beta vulgaris HOM05D007135 ORTHO05D008880 1.8e-34 149.1 94 79.8
Ah.01g018800 Amaranthus hybridus HOM05D007135 ORTHO05D008880 2.4e-31 138.7 94 77.7
QL11p046458 Quercus lobata HOM05D007135 ORTHO05D008880 4.3e-25 117.9 94 62.8
Cfa005113 Carpinus fangiana HOM05D007135 ORTHO05D008880 2.4e-23 112.1 94 61.7
Atru.chr5.3145 Acer truncatum HOM05D007135 ORTHO05D008880 3.1e-23 111.7 94 61.7
AL4G10430 Arabidopsis lyrata HOM05D007135 ORTHO05D008880 3.1e-23 111.7 97 62.9
Thhalv10000391m.g Eutrema salsugineum HOM05D007135 ORTHO05D008880 3.1e-23 111.7 99 62.6
RcHm_v2.0_Chr6g0267951 Rosa chinensis HOM05D007135 ORTHO05D008880 6.9e-23 110.5 95 61.1
Aqoxy2G03368 Aquilegia oxysepala HOM05D007135 ORTHO05D008880 1.2e-22 109.8 96 62.5
Gorai.005G250000 Gossypium raimondii HOM05D007135 ORTHO05D008880 1.2e-22 109.8 94 61.7
Thecc.02G074900 Theobroma cacao HOM05D007135 ORTHO05D008880 1.2e-22 109.8 94 59.6
Gohir.D02G222000 Gossypium hirsutum HOM05D007135 ORTHO05D008880 2.0e-22 109.0 94 61.7
COL.COLO4_26047 Corchorus olitorius HOM05D007135 ORTHO05D008880 3.4e-22 108.2 94 57.4
Duzib132G0527 Durio zibethinus HOM05D007135 ORTHO05D008880 3.4e-22 108.2 94 60.6
TWI75G0424 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 3.4e-22 108.2 94 58.5
Cpa.g.sc150.16 Carica papaya HOM05D007135 ORTHO05D008880 7.6e-22 107.1 94 60.6
FAN27G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.3e-21 106.3 94 56.4
PGR142G3962 Punica granatum HOM05D007135 ORTHO05D008880 1.3e-21 106.3 96 56.2
BraA09t41224Z Brassica rapa HOM05D007135 ORTHO05D008880 1.7e-21 105.9 93 60.2
CSS0018566 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 1.7e-21 105.9 92 57.6
MBI05_g16268_MAGBIO Magnolia biondii HOM05D007135 ORTHO05D008880 1.7e-21 105.9 92 59.8
CANSAT11G0395 Cannabis sativa HOM05D007135 ORTHO05D008880 2.2e-21 105.5 101 58.4
CARHR112160 Cardamine hirsuta HOM05D007135 ORTHO05D008880 2.2e-21 105.5 99 60.6
Solyc01g110400.2 Solanum lycopersicum HOM05D007135 ORTHO05D008880 2.2e-21 105.5 94 58.5
Sopen01g052550 Solanum pennellii HOM05D007135 ORTHO05D008880 2.2e-21 105.5 94 58.5
MELO3C013419.2 Cucumis melo HOM05D007135 ORTHO05D008880 2.9e-21 105.1 94 61.7
SalBow6G3736 Salvia bowleyana HOM05D007135 ORTHO05D008880 2.9e-21 105.1 96 59.4
Carub.0004s0033 Capsella rubella HOM05D007135 ORTHO05D008880 3.8e-21 104.8 99 58.6
DCAR_003685 Daucus carota HOM05D007135 ORTHO05D008880 3.8e-21 104.8 96 58.3
FvH4_2g10470 Fragaria vesca HOM05D007135 ORTHO05D008880 3.8e-21 104.8 93 58.1
FAN15G3517 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.8e-21 104.8 94 55.3
FAN24G2677 Fragaria x ananassa HOM05D007135 ORTHO05D008880 3.8e-21 104.8 93 58.1
Potri.004G163100 Populus trichocarpa HOM05D007135 ORTHO05D008880 3.8e-21 104.8 90 58.9
Sed0017056 Sechium edule HOM05D007135 ORTHO05D008880 3.8e-21 104.8 94 60.6
ATR0149G014 Amborella trichopoda HOM05D007135 ORTHO05D008880 4.9e-21 104.4 66 74.2
AT2G21290 Arabidopsis thaliana HOM05D007135 ORTHO05D008880 4.9e-21 104.4 99 56.6
Haze_02238 Corylus avellana HOM05D007135 ORTHO05D008880 4.9e-21 104.4 94 58.5
Gohir.A03G200700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 4.9e-21 104.4 94 60.6
Sp4g00480 Schrenkiella parvula HOM05D007135 ORTHO05D008880 4.9e-21 104.4 99 55.6
Aa31LG7G15200 Aethionema arabicum HOM05D007135 ORTHO05D008880 8.4e-21 103.6 96 59.4
ClCG02G004560 Citrullus lanatus HOM05D007135 ORTHO05D008880 8.4e-21 103.6 94 61.7
Migut.B00173 Erythranthe guttata HOM05D007135 ORTHO05D008880 8.4e-21 103.6 93 60.2
Gorai.002G149200 Gossypium raimondii HOM05D007135 ORTHO05D008880 8.4e-21 103.6 94 58.5
A09p58330 Brassica napus HOM05D007135 ORTHO05D008880 1.4e-20 102.8 93 59.1
Prupe.8G083700 Prunus persica HOM05D007135 ORTHO05D008880 1.4e-20 102.8 100 56.0
C08p41660 Brassica napus HOM05D007135 ORTHO05D008880 3.2e-20 101.7 94 58.5
Nn5g29239 Nelumbo nucifera HOM05D007135 ORTHO05D008880 3.2e-20 101.7 94 58.5
Ciclev10029699m.g Citrus clementina HOM05D007135 ORTHO05D008880 4.2e-20 101.3 94 58.5
Manes.11G081700 Manihot esculenta HOM05D007135 ORTHO05D008880 4.2e-20 101.3 92 57.6
BcaC02g08801 Brassica carinata HOM05D007135 ORTHO05D008880 5.5e-20 100.9 95 61.1
BolC4t26651H Brassica oleracea HOM05D007135 ORTHO05D008880 5.5e-20 100.9 95 61.1
Potri.009G124700 Populus trichocarpa HOM05D007135 ORTHO05D008880 5.5e-20 100.9 90 58.9
Sc08g0000910 Simmondsia chinensis HOM05D007135 ORTHO05D008880 5.5e-20 100.9 97 58.8
A04p16070 Brassica napus HOM05D007135 ORTHO05D008880 7.1e-20 100.5 95 58.9
C04p50530 Brassica napus HOM05D007135 ORTHO05D008880 7.1e-20 100.5 95 61.1
BraA04t17247Z Brassica rapa HOM05D007135 ORTHO05D008880 7.1e-20 100.5 95 58.9
CSS0017994 Camellia sinensis var. sinensis HOM05D007135 ORTHO05D008880 7.1e-20 100.5 94 55.3
Duzib248G1605 Durio zibethinus HOM05D007135 ORTHO05D008880 9.3e-20 100.1 94 57.4
Gohir.A13G090900 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.2e-19 99.8 94 57.4
PSO541G1924 Papaver somniferum HOM05D007135 ORTHO05D008880 1.2e-19 99.8 94 53.2
BcaB08g34980 Brassica carinata HOM05D007135 ORTHO05D008880 2.1e-19 99.0 90 58.9
BolC8t51729H Brassica oleracea HOM05D007135 ORTHO05D008880 2.1e-19 99.0 93 59.1
Medtr3g117570 Medicago truncatula HOM05D007135 ORTHO05D008880 2.1e-19 99.0 69 68.1
PSO675G0190 Papaver somniferum HOM05D007135 ORTHO05D008880 2.1e-19 99.0 94 53.2
CAN.G170.101 Capsicum annuum HOM05D007135 ORTHO05D008880 3.5e-19 98.2 94 56.4
MD10G1062900 Malus domestica HOM05D007135 ORTHO05D008880 3.5e-19 98.2 97 52.6
Manes.04G083200 Manihot esculenta HOM05D007135 ORTHO05D008880 6.0e-19 97.4 92 56.5
Lalb_Chr23g0265121 Lupinus albus HOM05D007135 ORTHO05D008880 1.0e-18 96.7 59 76.3
Lalb_Chr23g0265141 Lupinus albus HOM05D007135 ORTHO05D008880 1.0e-18 96.7 59 76.3
unitig_60.g25867 Utricularia gibba HOM05D007135 ORTHO05D008880 1.0e-18 96.7 94 57.4
SHI05613 Sapria himalayana HOM05D007135 ORTHO05D008880 1.3e-18 96.3 56 73.2
Gohir.D13G096700 Gossypium hirsutum HOM05D007135 ORTHO05D008880 1.8e-18 95.9 86 58.1
Os09g0528100 Oryza sativa ssp. japonica HOM05D007135 ORTHO05D008880 2.3e-18 95.5 60 71.7
TPR.G32169 Trifolium pratense HOM05D007135 ORTHO05D008880 2.3e-18 95.5 69 65.2
ECA234G2991 Erigeron canadensis HOM05D007135 ORTHO05D008880 3.9e-18 94.7 57 75.4
vmacro17421 Vaccinium macrocarpon HOM05D007135 ORTHO05D008880 8.7e-18 93.6 83 60.2
Dinv26818 Davidia involucrata HOM05D000193 ORTHO05D000402 1.5e-17 92.8 82 61.0
BcaC07g41158 Brassica carinata HOM05D007135 ORTHO05D008880 1.9e-17 92.4 91 57.1
Phvul.009G002700 Phaseolus vulgaris HOM05D007135 ORTHO05D008880 1.9e-17 92.4 94 52.1
Lj1g0005652 Lotus japonicus HOM05D007135 ORTHO05D008880 2.5e-17 92.0 90 55.6
Ca_15331_v3 Cicer arietinum L. HOM05D007135 ORTHO05D008880 3.3e-17 91.7 94 50.0
MD05G1055600 Malus domestica HOM05D007135 ORTHO05D008880 3.3e-17 91.7 65 63.1
Cc02_g16900 Coffea canephora HOM05D007135 ORTHO05D008880 5.7e-17 90.9 99 51.5
Psat5g003840 Pisum sativum HOM05D007135 ORTHO05D008880 5.7e-17 90.9 94 51.1
TWI79G1445 Tripterygium wilfordii HOM05D007135 ORTHO05D008880 1.6e-16 89.4 81 56.8
THA.LOC104824791 Tarenaya hassleriana HOM05D007135 ORTHO05D008880 6.3e-16 87.4 82 61.0
CiPaw.05G073400 Carya illinoinensis HOM05D007135 ORTHO05D008880 8.2e-16 87.0 83 56.6
Actinidia02247 Actinidia chinensis HOM05D007135 ORTHO05D008880 3.1e-15 85.1 100 54.0
Nitab4.5_0005932g0010 Nicotiana tabacum HOM05D007135 ORTHO05D008880 3.1e-15 85.1 84 61.9
Rhsim05G0068200 Rhododendron simsii HOM05D007135 ORTHO05D008880 3.1e-15 85.1 83 56.6
Nitab4.5_0005266g0060 Nicotiana tabacum HOM05D007135 ORTHO05D008880 1.2e-14 83.2 86 59.3
Duzib052G0169 Durio zibethinus HOM05D007135 ORTHO05D008880 2.6e-14 82.0 78 57.7
GSVIVG01024170001 Vitis vinifera HOM05D007135 ORTHO05D008880 2.9e-13 78.6 81 56.8
CsaV3_7G000400 Cucumis sativus L. HOM05D007135 ORTHO05D008880 3.2e-12 75.1 79 58.2
TAR381G0296 Trochodendron aralioides HOM05D007135 ORTHO05D008880 5.5e-12 74.3 81 54.3
HanXRQChr10g0294181 Helianthus annuus HOM05D007135 ORTHO05D008880 9.4e-12 73.6 49 77.6
Lsat_1_v5_gn_4_67341 Lactuca sativa HOM05D007135 ORTHO05D008880 9.4e-12 73.6 78 52.6
Glyma.04G007900 Glycine max HOM05D007135 ORTHO05D008880 1.2e-11 73.2 83 48.2
Glyma.06G007700 Glycine max HOM05D007135 ORTHO05D008880 1.2e-11 73.2 76 52.6
FAN20G0703 Fragaria x ananassa HOM05D007135 ORTHO05D008880 1.6e-11 72.8 47 70.2
Peaxi162Scf00016g00015 Petunia axillaris HOM05D007135 ORTHO05D008880 2.1e-11 72.4 50 70.0
Sabra09G0095700 Salix brachista HOM05D007135 ORTHO05D008880 3.6e-11 71.6 75 54.7
Haze_15927 Corylus avellana HOM05D018783 ORTHO05D008880 6.1e-11 70.9 59 62.7
HPP92_008881 Vanilla planifolia HOM05D007135 ORTHO05D008880 6.1e-11 70.9 42 71.4
Zm00001eb103340 Zea mays HOM05D007135 ORTHO05D008880 3.0e-10 68.6 80 43.8
Haze_08383 Corylus avellana HOM05D007135 ORTHO05D008880 5.1e-10 67.8 50 68.0
Sabra04G0109400 Salix brachista HOM05D007135 ORTHO05D008880 6.7e-10 67.4 75 46.7
Pp3c2_9610 Physcomitrium patens HOM05D007135 ORTHO05D008880 2.4e-07 58.9 79 45.6
MD12G1164000 Malus domestica HOM05D007113 ORTHO05D008859 7.7e-06 53.9 66 47.0


User provided reference genes

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