Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 7.4e-172 607.1 296 100.0
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.2e-134 483.4 287 82.2
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.9e-128 462.2 284 75.7
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.8e-126 455.7 288 74.0
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 4.7e-126 454.9 284 75.7
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.0e-125 452.2 287 75.3
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.0e-125 452.2 287 75.3
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 3.0e-125 452.2 288 74.7
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 3.0e-125 452.2 283 76.7
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 4.0e-125 451.8 283 75.6
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 4.0e-125 451.8 285 75.1
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 5.2e-125 451.4 284 74.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 5.2e-125 451.4 287 74.9
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.0e-124 449.5 284 74.6
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 2.6e-124 449.1 284 75.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.4e-124 448.4 283 74.6
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 7.5e-124 447.6 284 74.3
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 7.5e-124 447.6 284 74.6
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 7.5e-124 447.6 285 74.4
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 2.2e-123 446.0 284 74.3
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-123 446.0 284 74.3
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 4.9e-123 444.9 288 75.3
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 8.3e-123 444.1 284 72.9
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 4.1e-122 441.8 284 73.2
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 7.0e-122 441.0 292 77.4
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 9.2e-122 440.7 284 73.9
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.6e-121 439.9 283 72.4
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 2.0e-121 439.5 283 74.2
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.0e-121 439.5 287 72.8
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.7e-121 439.1 284 72.9
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.7e-121 439.1 284 72.9
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 4.6e-121 438.3 283 73.1
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 4.6e-121 438.3 293 70.6
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.7e-120 436.4 285 72.6
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.3e-120 436.0 285 71.6
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 3.9e-120 435.3 284 70.4
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 3.9e-120 435.3 284 71.8
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 6.6e-120 434.5 283 72.8
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 8.6e-120 434.1 288 70.5
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.6e-120 434.1 283 73.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 8.6e-120 434.1 283 71.0
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.1e-119 433.7 283 71.4
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.1e-119 433.7 288 69.8
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 1.1e-119 433.7 283 71.4
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.5e-119 433.3 283 72.4
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.5e-119 433.3 321 66.7
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.5e-119 433.3 283 71.7
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.5e-119 433.3 285 71.6
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.5e-119 432.6 283 72.1
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 9.5e-119 430.6 288 70.1
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 1.2e-118 430.3 294 69.0
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.6e-118 429.9 285 71.6
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.6e-118 429.9 284 70.8
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.6e-118 429.9 284 71.5
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.6e-118 428.7 278 73.0
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 3.6e-118 428.7 288 69.4
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 3.6e-118 428.7 289 69.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.7e-118 428.3 284 70.8
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 4.7e-118 428.3 288 68.4
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 8.0e-118 427.6 284 70.4
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 1.0e-117 427.2 288 68.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.4e-117 426.8 288 68.8
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 2.3e-117 426.0 284 70.1
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 2.3e-117 426.0 284 70.8
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.3e-117 426.0 284 71.1
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 4.0e-117 425.2 284 70.1
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.0e-117 425.2 285 71.9
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 8.9e-117 424.1 285 70.9
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 8.9e-117 424.1 321 65.1
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.5e-116 423.3 284 68.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 2.6e-116 422.5 290 69.0
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 4.4e-116 421.8 289 69.9
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 2.2e-115 419.5 286 69.9
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 4.9e-115 418.3 284 68.3
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 8.3e-115 417.5 289 69.2
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 1.1e-114 417.2 283 71.0
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 1.4e-114 416.8 287 68.6
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.4e-114 416.8 283 68.9
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.4e-114 416.0 284 68.7
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-114 416.0 284 69.7
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.4e-114 416.0 289 69.2
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.2e-114 415.6 289 68.2
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 7.0e-114 414.5 288 69.1
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.7e-113 412.5 290 69.3
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 3.5e-113 412.1 286 67.8
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 3.5e-113 412.1 287 68.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.5e-113 412.1 287 68.6
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 7.8e-113 411.0 289 67.5
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 2.3e-112 409.5 254 76.4
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 8.6e-112 407.5 305 65.9
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.9e-111 406.4 284 68.3
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.9e-111 406.4 294 65.6
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 2.1e-110 402.9 254 75.6
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 3.6e-110 402.1 284 67.3
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.6e-110 402.1 324 63.6
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 3.6e-110 402.1 324 63.6
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 3.1e-109 399.1 238 77.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 1.2e-108 397.1 286 66.4
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 2.6e-108 396.0 287 69.3
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.4e-106 390.2 253 72.7
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.9e-106 389.8 253 71.9
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 1.7e-104 383.3 284 65.5
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 2.3e-104 382.9 256 70.7
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.0e-104 382.5 254 72.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 8.6e-104 380.9 283 65.7
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 2.1e-102 376.3 287 65.9
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.6e-100 369.4 277 63.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 7.1e-98 361.3 286 61.9
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 4.6e-97 358.6 276 61.6
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 3.3e-95 352.4 225 74.7
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 9.3e-90 334.3 208 77.4
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.6e-89 333.6 258 62.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.7e-89 332.8 284 58.8
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 2.7e-89 332.8 280 58.6
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 7.8e-89 331.3 292 56.5
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 1.0e-88 330.9 245 65.7
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.2e-84 317.4 283 55.8
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 5.4e-82 308.5 263 56.7
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.4e-76 289.3 237 60.8
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.3e-71 272.3 228 62.7
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 7.4e-71 271.6 168 73.2
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 1.9e-66 256.9 191 64.9
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 1.4e-58 230.7 295 47.1
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 5.1e-48 195.7 130 66.9
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 4.4e-47 192.6 262 42.4
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 4.2e-42 176.0 273 38.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.1e-41 173.7 149 59.7
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-39 167.2 152 57.2
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.0e-39 167.2 150 57.3
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 7.4e-39 165.2 149 57.7
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-35 154.1 137 59.1
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 1.0e-32 144.8 113 59.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 9.1e-29 131.7 261 32.2
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 3.5e-28 129.8 91 68.1
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 7.7e-28 128.6 362 29.8
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.6e-25 120.9 168 40.5
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.8e-24 117.5 100 56.0
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-23 114.8 82 64.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.7e-22 110.9 75 66.7
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 4.8e-22 109.4 85 67.1
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 9.5e-18 95.1 59 66.1
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 5.2e-16 89.4 60 68.3
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 2.6e-15 87.0 90 52.2
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 4.4e-15 86.3 94 48.9
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 4.4e-15 86.3 67 61.2
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 7.5e-15 85.5 88 51.1
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 7.5e-15 85.5 88 51.1
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 9.8e-15 85.1 109 45.0
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 9.8e-15 85.1 189 31.2
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 4.9e-14 82.8 92 47.8
Cfa017289 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-13 81.6 56 67.9
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 5.4e-13 79.3 213 30.5
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.7e-12 77.0 46 65.2
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.7e-12 77.0 46 63.0
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 4.5e-12 76.3 124 41.9
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.5e-12 76.3 46 65.2
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 4.5e-12 76.3 46 65.2
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 1.9e-10 70.9 137 32.8
Cfa002003 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.8e-08 64.3 47 66.0
QL04p003183 Quercus lobata HOM05D001978 ORTHO05D003036 6.4e-06 55.8 45 60.0


User provided reference genes

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