Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 7.9e-120 433.7 209 100.0
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.5e-81 306.6 168 86.3
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.3e-77 293.5 208 72.1
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.3e-77 291.2 207 71.5
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.0e-75 286.2 207 70.5
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 5.9e-75 284.6 207 68.6
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 7.8e-75 284.3 207 69.6
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.0e-74 283.9 207 69.1
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.7e-74 283.1 207 70.0
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 2.3e-74 282.7 219 67.6
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 2.9e-74 282.3 207 68.6
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 3.9e-74 282.0 207 67.6
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.9e-74 282.0 207 69.6
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 3.9e-74 282.0 207 69.6
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 6.6e-74 281.2 210 68.1
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 6.6e-74 281.2 207 69.6
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 8.6e-74 280.8 208 69.7
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 1.1e-73 280.4 208 69.2
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.5e-73 280.0 207 69.1
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 1.9e-73 279.6 209 69.9
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 2.5e-73 279.3 208 69.2
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.5e-73 279.3 207 68.1
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.3e-73 278.9 208 69.7
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 3.3e-73 278.9 214 69.2
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 4.3e-73 278.5 208 69.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 9.5e-73 277.3 233 63.9
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 9.5e-73 277.3 208 69.7
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 1.2e-72 276.9 208 67.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 1.2e-72 276.9 208 67.8
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.2e-72 276.9 207 67.6
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.2e-72 276.9 207 67.1
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.6e-72 276.6 208 66.8
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.6e-72 276.6 208 68.8
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 4.7e-72 275.0 207 67.1
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.1e-72 274.6 208 68.3
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 6.1e-72 274.6 222 64.9
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 8.0e-72 274.2 208 65.9
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.0e-71 273.9 207 67.1
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 2.3e-71 272.7 208 67.8
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 3.1e-71 272.3 207 68.1
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.1e-71 272.3 207 65.7
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 5.2e-71 271.6 207 66.2
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 6.8e-71 271.2 207 65.7
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 6.8e-71 271.2 208 67.3
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 8.9e-71 270.8 235 61.3
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 8.9e-71 270.8 207 65.7
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-70 270.4 207 65.7
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 2.0e-70 269.6 207 65.7
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 3.4e-70 268.9 207 65.7
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 3.4e-70 268.9 207 65.2
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 4.4e-70 268.5 209 66.0
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 4.4e-70 268.5 209 66.0
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 4.4e-70 268.5 207 65.7
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 5.8e-70 268.1 207 64.7
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 7.5e-70 267.7 207 65.7
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 9.8e-70 267.3 208 64.4
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 9.8e-70 267.3 207 65.7
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.3e-69 266.9 207 64.7
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.3e-69 266.9 207 63.3
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 2.2e-69 266.2 207 64.3
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 2.9e-69 265.8 210 66.2
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 3.7e-69 265.4 207 63.8
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 3.7e-69 265.4 207 65.2
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 4.9e-69 265.0 207 64.3
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 4.9e-69 265.0 251 56.6
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 4.9e-69 265.0 207 65.2
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 6.4e-69 264.6 210 65.7
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.1e-68 263.8 207 63.3
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.1e-68 263.8 228 60.5
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.4e-68 263.5 213 65.7
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.9e-68 263.1 212 65.6
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 2.4e-68 262.7 207 64.7
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 2.4e-68 262.7 207 64.7
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 2.4e-68 262.7 207 64.7
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 3.2e-68 262.3 211 65.4
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 4.1e-68 261.9 168 70.8
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.1e-68 261.9 207 63.8
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 4.1e-68 261.9 211 64.9
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 9.2e-68 260.8 206 64.6
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 9.2e-68 260.8 229 62.0
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.2e-67 260.4 208 64.4
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 1.2e-67 260.4 207 63.3
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.6e-67 260.0 213 64.3
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.6e-67 260.0 248 56.9
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.7e-67 259.2 243 61.3
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 3.5e-67 258.8 207 62.8
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 7.8e-67 257.7 207 62.3
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 6.6e-66 254.6 210 62.4
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 1.5e-65 253.4 209 62.2
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 2.1e-64 249.6 230 58.3
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 2.8e-64 249.2 190 65.3
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 3.6e-64 248.8 210 64.8
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 8.0e-64 247.7 199 64.8
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 1.1e-63 247.3 210 64.3
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.0e-63 245.4 179 69.3
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 6.4e-61 238.0 180 66.7
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.4e-60 236.1 195 63.1
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 2.4e-60 236.1 208 60.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.2e-59 233.8 180 65.6
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.2e-59 233.8 212 61.3
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 4.6e-59 231.9 115 97.4
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 6.0e-59 231.5 115 98.3
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 8.6e-58 227.6 208 55.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.3e-57 225.3 200 60.5
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 5.6e-57 224.9 115 95.7
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 7.3e-57 224.6 179 62.6
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.2e-56 223.8 180 66.7
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 8.1e-56 221.1 208 59.6
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 2.3e-55 219.5 207 56.0
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 4.0e-55 218.8 207 53.6
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 5.2e-55 218.4 208 54.3
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 4.4e-54 215.3 208 52.9
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 7.5e-54 214.5 222 54.1
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 1.7e-53 213.4 237 49.4
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 6.4e-53 211.5 126 80.2
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.1e-51 206.5 407 35.4
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.6e-51 205.3 208 56.2
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 3.9e-50 202.2 209 55.5
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.5e-49 200.3 115 81.7
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.2e-46 190.7 198 54.5
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.4e-44 183.0 242 45.0
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 9.0e-39 164.5 171 55.6
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.6e-38 162.9 99 81.8
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 7.6e-38 161.4 142 62.0
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 3.2e-36 156.0 203 43.3
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 4.6e-35 152.1 117 66.7
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 3.0e-34 149.4 293 39.2
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 6.6e-34 148.3 194 40.2
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 1.1e-33 147.5 187 43.3
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.8e-32 142.9 146 52.1
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 7.1e-28 128.3 189 47.1
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 2.7e-27 126.3 71 84.5
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 2.0e-22 110.2 60 88.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-19 99.0 67 73.1
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 2.3e-18 96.7 115 47.0
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 4.8e-16 89.0 52 80.8
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.4e-15 87.4 147 40.1
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.4e-15 86.7 173 41.0
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 9.0e-15 84.7 60 63.3
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.0e-10 69.7 91 41.8


User provided reference genes

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