Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 0.0e+00 1090.9 578 100.0
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 9.0e-299 1029.6 580 95.2
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.0e-269 932.2 604 83.3
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.4e-259 899.4 580 83.1
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 1.4e-254 882.9 576 80.9
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 2.8e-252 875.2 562 82.0
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 1.6e-250 869.4 557 82.9
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 5.9e-250 867.5 580 80.3
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 1.7e-249 865.9 546 83.0
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 3.8e-249 864.8 564 80.9
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 6.6e-249 864.0 590 79.7
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.1e-248 863.2 579 80.1
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 2.5e-248 862.1 576 79.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 9.5e-248 860.1 586 79.2
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 9.5e-248 860.1 541 83.4
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 2.1e-247 859.0 546 82.4
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 2.8e-247 858.6 586 78.3
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 3.6e-247 858.2 531 84.4
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 3.6e-247 858.2 523 84.5
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 4.7e-247 857.8 523 84.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.1e-247 857.4 576 78.8
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 8.0e-247 857.1 548 81.9
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 1.0e-246 856.7 576 79.5
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.0e-246 856.7 535 83.4
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.4e-246 856.3 523 83.9
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 1.8e-246 855.9 589 78.1
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 1.8e-246 855.9 555 81.1
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 2.3e-246 855.5 582 78.4
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 3.0e-246 855.1 584 78.6
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 5.2e-246 854.4 548 82.7
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 6.8e-246 854.0 546 82.2
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 8.9e-246 853.6 580 77.8
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 1.2e-245 853.2 602 77.4
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.4e-245 851.7 526 83.7
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 5.7e-245 850.9 526 84.0
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 7.5e-245 850.5 585 77.3
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 7.5e-245 850.5 563 80.5
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 7.5e-245 850.5 561 81.8
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.3e-244 849.7 548 82.3
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.3e-244 849.7 564 80.0
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 1.7e-244 849.4 540 82.4
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 2.9e-244 848.6 604 77.3
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 3.7e-244 848.2 561 80.7
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 4.9e-244 847.8 561 80.7
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 4.9e-244 847.8 491 88.6
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 6.4e-244 847.4 579 78.2
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.1e-243 846.7 583 78.0
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.8e-243 845.9 579 78.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 3.2e-243 845.1 583 78.0
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 4.1e-243 844.7 551 81.9
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 4.1e-243 844.7 563 80.3
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 5.4e-243 844.3 561 80.0
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 5.4e-243 844.3 530 82.8
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 5.4e-243 844.3 530 82.8
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 5.4e-243 844.3 593 76.7
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.0e-242 842.4 618 74.6
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 2.7e-242 842.0 525 84.8
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 2.7e-242 842.0 539 81.3
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 5.9e-242 840.9 532 82.9
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 2.3e-241 839.0 531 82.3
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 8.6e-241 837.0 544 80.7
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 1.1e-240 836.6 582 77.1
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.1e-240 836.6 529 82.2
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 3.3e-240 835.1 559 79.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 3.3e-240 835.1 487 87.1
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 7.3e-240 833.9 513 84.4
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.2e-239 833.2 585 76.1
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.6e-239 832.8 584 76.4
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 2.1e-239 832.4 526 83.1
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.1e-239 832.4 533 83.1
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.1e-239 832.4 585 77.3
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 2.8e-239 832.0 569 77.0
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 8.0e-239 830.5 584 76.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 1.0e-238 830.1 527 82.4
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.0e-238 830.1 559 78.2
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.0e-238 828.2 568 77.3
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 8.9e-238 827.0 564 78.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.2e-237 826.6 569 76.6
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 2.0e-237 825.9 529 81.5
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 2.0e-237 825.9 583 76.0
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 2.6e-237 825.5 567 76.5
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 5.8e-237 824.3 530 80.4
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 7.5e-237 823.9 553 78.7
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.2e-236 822.4 555 77.1
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 8.3e-236 820.5 538 81.8
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.2e-234 816.6 538 79.6
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.6e-234 816.2 523 80.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 3.5e-234 815.1 592 74.7
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 4.6e-234 814.7 580 76.6
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 1.3e-233 813.1 491 85.1
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.5e-232 808.9 574 76.5
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.6e-232 807.7 482 87.3
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.1e-230 803.5 529 80.3
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 8.9e-230 800.4 530 80.6
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.2e-229 800.0 540 80.0
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 7.5e-229 797.3 513 80.9
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-227 793.1 504 82.5
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.1e-224 783.5 592 72.1
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 5.2e-222 774.6 466 85.8
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.9e-219 766.1 493 81.9
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.6e-215 753.1 576 72.2
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.4e-214 750.0 433 89.1
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 4.9e-212 741.5 488 77.7
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.9e-211 739.6 516 75.0
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 1.0e-209 733.8 436 86.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 1.9e-208 729.6 487 78.0
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.5e-205 719.9 724 59.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 1.5e-205 719.9 535 73.3
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.5e-205 719.9 436 84.4
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 6.4e-204 714.5 436 85.8
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 7.9e-202 707.6 589 65.0
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 1.0e-201 707.2 548 68.6
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 6.4e-196 688.0 467 75.2
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.2e-195 685.6 484 73.3
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 4.3e-192 675.2 394 88.6
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 2.2e-188 662.9 437 78.3
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 8.7e-185 651.0 395 84.1
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 5.7e-184 648.3 410 81.5
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-181 640.2 429 77.6
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 4.5e-181 638.6 389 84.3
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 3.8e-180 635.6 438 74.2
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.3e-177 627.1 421 76.5
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 8.7e-177 624.4 420 76.4
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 3.7e-175 619.0 425 74.4
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.6e-173 612.8 440 77.5
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 8.8e-169 597.8 583 60.0
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.9e-164 582.8 468 69.7
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 9.1e-150 534.6 314 86.6
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 4.5e-149 532.3 531 58.8
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 5.5e-147 525.4 443 67.0
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.6e-141 507.3 363 76.6
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.8e-137 491.9 454 63.7
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 9.2e-134 481.5 354 69.5
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 2.3e-132 476.9 299 82.3
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 3.9e-124 449.5 276 84.1
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.1e-123 448.0 341 73.9
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 1.6e-122 444.1 259 87.3
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.4e-121 441.0 492 50.0
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 1.4e-121 441.0 285 81.1
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 3.4e-88 330.1 503 45.1
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.9e-78 297.7 213 70.0
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.6e-77 294.7 186 79.0
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 3.9e-76 290.0 583 38.9
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.5e-67 260.8 248 59.3
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 3.1e-65 253.8 192 70.3
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.0e-56 224.6 142 83.1
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 5.1e-52 209.9 193 56.5
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 2.0e-51 208.0 228 51.8
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 5.3e-49 199.9 131 77.1
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.5e-48 198.4 119 85.7
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 9.4e-38 162.5 176 55.1
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.6e-37 161.8 183 53.6
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 3.8e-31 140.6 109 73.4
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.0e-31 140.2 91 72.5
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 4.2e-30 137.1 101 76.2
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 8.3e-26 122.9 104 63.5
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 3.1e-25 120.9 114 57.9
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.1e-25 120.6 78 79.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 2.0e-24 118.2 69 84.1
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 4.5e-24 117.1 90 64.4
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 6.1e-21 106.7 61 88.5
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 2.3e-20 104.8 68 77.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.5e-14 84.7 53 81.1
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.2e-12 77.0 58 67.2
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 8.9e-12 76.3 141 36.2
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.6e-11 74.7 48 77.1
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 2.7e-08 64.7 93 46.2
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 4.6e-08 63.9 39 82.1
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 1.3e-07 62.4 55 58.2
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 8.6e-07 59.7 54 55.6


User provided reference genes

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