Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 2.0e-182 642.5 379 100.0
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.2e-153 547.0 414 79.2
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.5e-140 502.7 379 81.0
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 5.0e-88 328.9 355 61.1
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 6.1e-86 322.0 268 66.4
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 6.3e-83 312.0 414 52.4
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 1.6e-81 307.4 415 52.3
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 7.7e-81 305.1 429 51.0
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.7e-80 303.9 387 52.7
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 2.2e-80 303.5 383 55.4
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 5.0e-80 302.4 429 50.6
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 3.2e-79 299.7 420 51.2
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 5.5e-79 298.9 391 53.7
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 7.2e-79 298.5 429 49.9
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.6e-78 297.4 421 49.6
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.6e-78 296.2 336 57.7
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.0e-78 295.0 407 52.1
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 8.0e-78 295.0 388 54.4
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.8e-77 293.9 421 49.4
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.3e-77 293.5 418 48.8
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 3.0e-77 293.1 328 58.2
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 3.0e-77 293.1 410 52.2
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.0e-77 292.7 423 50.8
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 5.2e-77 292.4 418 51.4
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.2e-76 291.2 330 59.7
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 2.6e-76 290.0 421 49.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.6e-76 290.0 421 50.1
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 2.8e-75 286.6 420 49.3
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 3.7e-75 286.2 392 52.3
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 4.8e-75 285.8 417 48.9
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 6.3e-75 285.4 409 51.3
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.4e-74 284.3 373 53.4
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.4e-74 284.3 431 50.3
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.8e-74 283.9 420 48.8
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 5.3e-74 282.3 386 46.9
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 2.0e-73 280.4 412 49.3
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 4.5e-73 279.3 405 49.1
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.5e-73 279.3 429 48.7
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 1.0e-72 278.1 417 48.9
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 1.1e-71 274.6 420 48.3
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.9e-71 273.9 432 48.1
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 4.7e-70 269.2 337 51.9
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.8e-69 267.3 395 47.6
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.0e-69 266.5 464 45.0
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 4.0e-69 266.2 416 47.8
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 4.0e-69 266.2 433 46.9
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 5.2e-69 265.8 466 44.6
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 6.8e-69 265.4 376 46.3
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.5e-68 264.2 356 52.2
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 7.5e-68 261.9 383 46.7
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 7.5e-68 261.9 396 47.2
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 9.8e-68 261.5 409 47.9
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 9.8e-68 261.5 402 48.0
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.3e-67 261.2 376 48.7
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 8.3e-67 258.5 428 48.1
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 1.1e-66 258.1 358 47.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.8e-66 257.3 396 47.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.8e-66 257.3 430 44.7
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 2.4e-66 256.9 396 46.7
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 3.1e-66 256.5 418 43.5
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.2e-65 254.6 387 48.8
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 2.7e-65 253.4 379 49.6
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 4.5e-65 252.7 416 45.0
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 4.5e-65 252.7 399 49.1
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 2.3e-64 250.4 356 48.9
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 5.0e-64 249.2 298 54.0
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 6.5e-64 248.8 256 57.4
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 6.5e-64 248.8 331 47.4
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.1e-63 248.1 235 59.6
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.6e-62 244.2 441 40.8
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.6e-62 244.2 376 48.4
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 6.1e-62 242.3 377 49.3
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 6.1e-62 242.3 276 48.9
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 8.9e-61 238.4 392 48.7
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-60 237.7 261 52.5
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 4.4e-60 236.1 408 45.6
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 5.7e-60 235.7 259 49.8
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 7.5e-60 235.3 528 40.5
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 9.8e-60 235.0 398 47.5
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 1.7e-59 234.2 318 45.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 1.4e-58 231.1 358 46.1
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 9.2e-58 228.4 251 52.6
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 2.0e-57 227.3 391 44.8
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 5.9e-57 225.7 223 57.0
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 1.0e-56 224.9 351 48.1
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.3e-56 223.8 354 48.9
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 6.6e-56 222.2 377 45.9
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 6.6e-56 222.2 323 49.8
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.1e-55 221.5 377 45.6
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 5.6e-55 219.2 433 40.2
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.2e-54 218.0 377 46.4
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 8.0e-54 215.3 399 44.9
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 8.0e-54 215.3 287 48.1
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.8e-53 214.2 382 45.5
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.3e-53 213.8 391 44.0
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.2e-52 211.5 348 47.4
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.2e-52 211.5 367 46.9
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 9.8e-52 208.4 383 39.7
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.2e-51 207.2 377 45.1
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 6.4e-51 205.7 289 46.0
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.3e-51 205.3 365 43.3
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.0e-49 200.7 382 43.5
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 3.5e-49 199.9 243 50.6
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 7.8e-49 198.7 163 74.2
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.0e-48 198.4 361 44.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.0e-48 198.4 361 44.6
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-47 194.5 371 45.0
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 7.5e-44 182.2 232 51.7
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.7e-43 181.0 331 41.4
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 3.7e-43 179.9 238 49.6
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.9e-43 179.5 237 48.5
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 4.1e-42 176.4 348 40.5
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.3e-40 171.4 377 40.6
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 3.9e-40 169.9 378 41.3
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 6.6e-40 169.1 379 42.0
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 5.6e-39 166.0 308 39.3
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 2.8e-38 163.7 297 38.7
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.1e-37 161.8 377 40.1
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 7.5e-36 155.6 342 41.2
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 3.2e-34 150.2 205 44.9
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.6e-33 146.4 364 42.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 2.9e-27 127.1 156 48.7
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-21 107.8 228 44.7
Hund06385 Selenicereus undatus HOM05D004981 ORTHO05D005635 3.8e-19 100.1 202 37.6
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.6e-17 94.7 195 39.5
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 6.0e-17 92.8 133 48.1
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.3e-16 91.7 224 30.4
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 1.1e-15 88.6 85 55.3
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.5e-15 87.4 83 60.2
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 2.2e-11 74.3 75 56.0
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 5.4e-10 69.7 130 36.9
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 9.3e-10 68.9 136 40.4
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 1.2e-09 68.6 201 30.3
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 3.9e-08 63.5 193 36.8
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 1.6e-06 58.2 64 46.9


User provided reference genes

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