Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.4e-182 642.9 329 100.0
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 8.2e-172 607.1 329 93.9
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 6.0e-122 441.4 365 67.1
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.5e-104 383.6 337 60.8
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.8e-102 376.7 327 65.1
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 7.4e-96 354.8 316 61.4
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.1e-86 324.3 332 50.3
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.1e-86 324.3 332 50.3
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 1.2e-85 320.9 330 50.6
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 2.0e-85 320.1 321 49.8
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.6e-85 319.7 333 50.2
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 5.8e-85 318.5 334 55.1
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 5.8e-85 318.5 322 50.0
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 6.5e-84 315.1 331 52.0
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 6.5e-84 315.1 327 51.4
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.1e-83 314.3 333 52.6
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 1.4e-83 313.9 332 54.2
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.9e-83 313.5 310 51.6
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 2.5e-83 313.2 334 49.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 3.5e-82 309.3 330 51.8
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 3.5e-82 309.3 336 50.9
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 6.0e-82 308.5 321 53.3
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.3e-81 307.4 341 51.6
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 2.3e-81 306.6 330 47.6
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 3.0e-81 306.2 339 48.4
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 3.0e-81 306.2 328 49.7
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 3.0e-81 306.2 328 54.0
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 8.7e-81 304.7 340 48.8
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 1.1e-80 304.3 341 50.4
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 1.1e-80 304.3 329 54.1
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 2.5e-80 303.1 322 53.4
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.3e-80 302.4 330 48.8
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 5.7e-80 302.0 353 45.9
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 9.7e-80 301.2 340 47.9
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.6e-79 300.4 333 53.5
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.2e-79 300.1 326 52.5
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 2.2e-79 300.1 342 50.9
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.2e-79 300.1 378 46.8
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 2.8e-79 299.7 334 52.4
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 4.8e-79 298.9 319 50.8
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 4.8e-79 298.9 316 54.4
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 8.2e-79 298.1 348 47.7
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 1.1e-78 297.7 316 48.7
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.1e-78 297.7 324 53.4
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 1.4e-78 297.4 349 50.1
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 1.4e-78 297.4 329 50.8
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.8e-78 297.0 325 52.9
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.4e-78 296.6 346 48.0
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 2.4e-78 296.6 325 53.2
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.1e-78 296.2 363 47.7
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 3.1e-78 296.2 330 51.5
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 4.1e-78 295.8 360 47.8
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 9.0e-78 294.7 330 48.5
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.2e-77 294.3 353 48.7
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 1.5e-77 293.9 328 50.6
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 4.5e-77 292.4 330 49.1
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 4.5e-77 292.4 346 49.4
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 5.9e-77 292.0 339 47.2
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 1.7e-76 290.4 329 51.1
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.7e-76 290.4 324 52.5
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 2.9e-76 289.7 325 46.5
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 6.5e-76 288.5 332 52.4
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.2e-75 285.0 327 50.2
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 9.4e-75 284.6 332 47.3
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.6e-74 283.9 357 46.8
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 6.1e-74 282.0 324 49.4
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 7.9e-74 281.6 328 50.3
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.5e-72 277.3 329 50.2
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 8.2e-71 271.6 342 48.2
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 8.2e-71 271.6 325 49.8
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 1.4e-70 270.8 354 49.2
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 6.9e-70 268.5 340 45.9
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.5e-69 267.3 330 43.9
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 3.4e-69 266.2 329 46.5
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 4.5e-69 265.8 332 46.1
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 2.9e-68 263.1 325 45.2
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.2e-67 259.6 307 45.3
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 4.2e-67 259.2 313 46.6
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.2e-67 259.2 325 44.0
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 5.5e-67 258.8 328 48.2
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 5.5e-67 258.8 331 43.8
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 2.1e-66 256.9 277 49.1
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.4e-65 254.2 334 45.2
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 1.8e-65 253.8 334 45.2
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 3.9e-65 252.7 334 44.9
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 1.5e-64 250.8 336 46.4
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.6e-64 250.0 323 42.1
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 5.7e-64 248.8 345 43.5
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 7.4e-64 248.4 357 42.6
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 4.8e-63 245.7 349 41.0
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 4.8e-63 245.7 349 41.3
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 4.8e-63 245.7 349 41.0
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 4.8e-63 245.7 349 41.0
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 8.2e-63 245.0 328 43.9
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 8.2e-63 245.0 349 41.0
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.8e-62 243.8 324 42.9
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 2.4e-62 243.4 342 43.3
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 5.3e-62 242.3 349 41.3
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 9.1e-62 241.5 343 42.0
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 1.3e-60 237.7 333 43.8
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 2.9e-60 236.5 335 41.5
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 5.0e-60 235.7 380 40.0
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 2.1e-58 230.3 374 39.0
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 8.0e-58 228.4 326 40.2
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.9e-57 226.1 262 50.0
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 2.2e-55 220.3 311 40.8
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 9.1e-54 214.9 317 45.1
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 3.5e-53 213.0 334 42.5
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 4.2e-51 206.1 326 37.7
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 6.7e-49 198.7 328 39.9
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 7.5e-48 195.3 386 33.9
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 5.0e-44 182.6 128 61.7
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 7.5e-40 168.7 326 33.1
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.3e-39 167.9 237 40.1
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.2e-39 167.2 168 50.0
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 2.9e-36 156.8 349 33.2
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 8.6e-36 155.2 166 51.2
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 2.8e-31 140.2 306 31.7
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 5.4e-30 136.0 306 34.0
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 7.0e-30 135.6 137 51.1
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 9.2e-30 135.2 158 48.1
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 8.6e-28 128.6 306 30.1
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 1.2e-26 124.8 328 30.2
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.8e-25 120.9 329 26.7
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.2e-21 108.2 220 41.8
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 6.2e-18 95.9 149 34.9
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.3e-15 88.2 94 46.8
Os01g0726700 Oryza sativa ssp. japonica HOM05D003750 ORTHO05D004337 5.8e-08 62.8 140 34.3
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 2.9e-07 60.5 54 53.7
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 6.4e-07 59.3 159 29.6


User provided reference genes

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