Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62010046 Chenopodium quinoa HOM05D006199 ORTHO05D006558 3.8e-216 754.6 393 100.0
AUR62013038 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-191 672.9 417 87.5
EL10Ac9g21386 Beta vulgaris HOM05D006199 ORTHO05D006558 1.3e-160 570.1 417 73.9
Ah.01g022950 Amaranthus hybridus HOM05D006199 ORTHO05D006558 1.2e-156 557.0 422 72.3
Hund00025 Selenicereus undatus HOM05D006199 ORTHO05D006558 8.4e-123 444.5 392 65.6
Sc18g0006460 Simmondsia chinensis HOM05D006199 ORTHO05D006558 1.3e-107 394.0 363 58.4
Actinidia00620 Actinidia chinensis HOM05D006199 ORTHO05D006558 3.8e-107 392.5 389 56.3
Cfa005236 Carpinus fangiana HOM05D006199 ORTHO05D006558 9.4e-106 387.9 411 54.3
Potri.009G134500 Populus trichocarpa HOM05D006199 ORTHO05D006558 4.6e-105 385.6 416 54.1
CANSAT25G2535 Cannabis sativa HOM05D006199 ORTHO05D006558 7.9e-105 384.8 413 53.8
QL11p050170 Quercus lobata HOM05D006199 ORTHO05D006558 7.9e-105 384.8 419 52.7
Ciclev10028644m.g Citrus clementina HOM05D006199 ORTHO05D006558 1.8e-104 383.6 388 55.7
CiPaw.05G081500 Carya illinoinensis HOM05D006199 ORTHO05D006558 2.3e-104 383.3 413 52.5
Sabra09G0104300 Salix brachista HOM05D006199 ORTHO05D006558 2.6e-103 379.8 417 53.5
TAR628G1195 Trochodendron aralioides HOM05D006199 ORTHO05D006558 4.8e-102 375.6 410 52.4
Nn5g30772 Nelumbo nucifera HOM05D006199 ORTHO05D006558 3.1e-101 372.9 415 53.3
MD10G1095100 Malus domestica HOM05D006199 ORTHO05D006558 5.3e-101 372.1 411 50.6
Rhsim11G0191800 Rhododendron simsii HOM05D006199 ORTHO05D006558 6.9e-101 371.7 413 51.1
Dinv41943 Davidia involucrata HOM05D006199 ORTHO05D006558 9.1e-101 371.3 335 58.8
Lj5A179T83 Lonicera japonica HOM05D006199 ORTHO05D006558 9.1e-101 371.3 415 50.6
RcHm_v2.0_Chr6g0251921 Rosa chinensis HOM05D006199 ORTHO05D006558 2.6e-100 369.8 415 51.3
TWI75G1548 Tripterygium wilfordii HOM05D006199 ORTHO05D006558 2.6e-100 369.8 414 52.7
FvH4_2g01260 Fragaria vesca HOM05D006199 ORTHO05D006558 3.4e-100 369.4 415 51.1
Thecc.02G060900 Theobroma cacao HOM05D006199 ORTHO05D006558 7.7e-100 368.2 384 55.7
Solyc01g111550.3 Solanum lycopersicum HOM05D006199 ORTHO05D006558 3.8e-99 365.9 414 51.0
Haze_02147 Corylus avellana HOM05D006199 ORTHO05D006558 8.5e-99 364.8 471 47.3
Sopen01g053590 Solanum pennellii HOM05D006199 ORTHO05D006558 2.5e-98 363.2 419 50.8
FAN20G1063 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-98 362.8 415 49.9
CAN.G588.74 Capsicum annuum HOM05D006199 ORTHO05D006558 9.4e-98 361.3 417 51.6
ClCG02G011890 Citrullus lanatus HOM05D006199 ORTHO05D006558 9.4e-98 361.3 412 52.7
CsaV3_2G016060 Cucumis sativus L. HOM05D006199 ORTHO05D006558 1.2e-97 360.9 415 52.5
Gohir.A01G168100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 1.2e-97 360.9 398 53.5
Gorai.002G197400 Gossypium raimondii HOM05D006199 ORTHO05D006558 1.2e-97 360.9 398 53.5
Duzib132G0247 Durio zibethinus HOM05D006199 ORTHO05D006558 1.8e-96 357.1 394 53.8
Nitab4.5_0005853g0010 Nicotiana tabacum HOM05D006199 ORTHO05D006558 3.9e-96 355.9 418 50.0
Phvul.009G119500 Phaseolus vulgaris HOM05D006199 ORTHO05D006558 8.8e-96 354.8 415 49.9
GSVIVG01024030001 Vitis vinifera HOM05D006199 ORTHO05D006558 9.7e-95 351.3 334 58.1
Cc02_g16220 Coffea canephora HOM05D006199 ORTHO05D006558 1.3e-94 350.9 341 57.5
COL.COLO4_17328 Corchorus olitorius HOM05D006199 ORTHO05D006558 1.7e-94 350.5 361 55.4
VMungo1309G0102 Vigna mungo HOM05D006199 ORTHO05D006558 2.8e-94 349.7 413 49.6
Nitab4.5_0006645g0060 Nicotiana tabacum HOM05D006199 ORTHO05D006558 1.4e-93 347.4 440 47.5
PGR142G1980 Punica granatum HOM05D006199 ORTHO05D006558 2.4e-93 346.7 427 48.9
MBI08_g14630_MAGBIO Magnolia biondii HOM05D006199 ORTHO05D006558 4.1e-93 345.9 417 49.9
Sed0003263 Sechium edule HOM05D006199 ORTHO05D006558 7.7e-92 341.7 414 49.8
Lsat_1_v5_gn_4_71580 Lactuca sativa HOM05D006199 ORTHO05D006558 1.3e-91 340.9 409 49.4
Prupe.8G164900 Prunus persica HOM05D006199 ORTHO05D006558 2.2e-91 340.1 413 48.9
FAN24G2717 Fragaria x ananassa HOM05D006199 ORTHO05D006558 6.5e-91 338.6 381 49.9
FAN27G0272 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.2e-90 336.3 413 48.7
Eucgr.I01413 Eucalyptus grandis HOM05D006199 ORTHO05D006558 5.5e-90 335.5 415 49.6
Glyma.04G003800 Glycine max HOM05D006199 ORTHO05D006558 9.4e-90 334.7 419 48.4
MSTRG.19995 Avicennia marina HOM05D006199 ORTHO05D006558 1.6e-89 334.0 416 47.6
Peaxi162Scf00362g00651 Petunia axillaris HOM05D006199 ORTHO05D006558 4.7e-89 332.4 430 47.2
Aqoxy6G02177 Aquilegia oxysepala HOM05D006199 ORTHO05D006558 1.0e-88 331.3 414 47.6
arahy.Tifrunner.gnm1.ann1.H9ZTXG Arachis hypogaea HOM05D006199 ORTHO05D006558 1.2e-87 327.8 417 48.2
Manes.04G075600 Manihot esculenta HOM05D006199 ORTHO05D006558 4.4e-87 325.9 361 50.4
MELO3C020815.2 Cucumis melo HOM05D006199 ORTHO05D006558 2.8e-86 323.2 464 45.5
SalBow1G2578 Salvia bowleyana HOM05D006199 ORTHO05D006558 1.4e-85 320.9 416 46.6
Gohir.D01G159100 Gossypium hirsutum HOM05D006199 ORTHO05D006558 2.4e-85 320.1 313 57.2
PGSC0003DMG400006190 Solanum tuberosum HOM05D006199 ORTHO05D006558 9.1e-85 318.2 413 47.2
Ca_15302_v3 Cicer arietinum L. HOM05D006199 ORTHO05D006558 2.7e-84 316.6 368 50.0
Medtr3g117880 Medicago truncatula HOM05D006199 ORTHO05D006558 3.5e-84 316.2 416 47.4
ECA234G0878 Erigeron canadensis HOM05D006199 ORTHO05D006558 4.5e-84 315.8 409 47.7
SHI05731 Sapria himalayana HOM05D006199 ORTHO05D006558 7.7e-84 315.1 338 51.8
Thhalv10000193m.g Eutrema salsugineum HOM05D006199 ORTHO05D006558 2.2e-83 313.5 420 46.7
AT2G20980 Arabidopsis thaliana HOM05D006199 ORTHO05D006558 2.5e-82 310.1 410 46.8
PSO541G4917 Papaver somniferum HOM05D006199 ORTHO05D006558 4.2e-82 309.3 428 47.0
HanXRQChr10g0300911 Helianthus annuus HOM05D006199 ORTHO05D006558 7.2e-82 308.5 414 46.9
TPR.G38477 Trifolium pratense HOM05D006199 ORTHO05D006558 7.2e-82 308.5 417 46.3
Sp4g00170 Schrenkiella parvula HOM05D006199 ORTHO05D006558 1.6e-81 307.4 412 46.8
PSO675G4200 Papaver somniferum HOM05D006199 ORTHO05D006558 2.1e-81 307.0 426 46.5
Migut.B00085 Erythranthe guttata HOM05D006199 ORTHO05D006558 3.6e-81 306.2 412 45.1
AL4G10110 Arabidopsis lyrata HOM05D006199 ORTHO05D006558 8.0e-81 305.1 344 50.3
Lj1g0009253 Lotus japonicus HOM05D006199 ORTHO05D006558 1.0e-80 304.7 424 46.0
Atru.chr5.3311 Acer truncatum HOM05D006199 ORTHO05D006558 6.8e-80 302.0 364 49.2
Carub.0004s0005 Capsella rubella HOM05D006199 ORTHO05D006558 6.8e-80 302.0 350 49.4
THA.LOC104807811 Tarenaya hassleriana HOM05D006199 ORTHO05D006558 2.8e-78 296.6 410 46.8
ATR0078G008 Amborella trichopoda HOM05D006199 ORTHO05D006558 2.7e-76 290.0 413 43.6
A03p27410 Brassica napus HOM05D006199 ORTHO05D006558 1.3e-75 287.7 420 44.8
Cpa.g.sc37.143 Carica papaya HOM05D006199 ORTHO05D006558 1.3e-75 287.7 268 59.0
Oeu050364.1 Olea europaea HOM05D006199 ORTHO05D006558 1.7e-75 287.3 230 62.2
C03p33040 Brassica napus HOM05D006199 ORTHO05D006558 8.6e-75 285.0 420 44.3
BraA03t11952Z Brassica rapa HOM05D006199 ORTHO05D006558 8.6e-75 285.0 420 44.5
DCAR_022808 Daucus carota HOM05D006199 ORTHO05D006558 1.5e-74 284.3 411 45.3
BcaC01g04861 Brassica carinata HOM05D006199 ORTHO05D006558 4.2e-74 282.7 420 44.0
BolC3t15631H Brassica oleracea HOM05D006199 ORTHO05D006558 5.5e-74 282.3 420 44.0
Aa31LG7G15660 Aethionema arabicum HOM05D006199 ORTHO05D006558 4.7e-73 279.3 433 42.7
CARHR111860 Cardamine hirsuta HOM05D006199 ORTHO05D006558 2.3e-72 276.9 380 45.5
Lalb_Chr23g0265011 Lupinus albus HOM05D006199 ORTHO05D006558 9.8e-71 271.6 411 43.6
CiPaw.06G122500 Carya illinoinensis HOM05D006199 ORTHO05D006558 1.8e-69 267.3 335 48.7
arahy.Tifrunner.gnm1.ann1.WS10KT Arachis hypogaea HOM05D006199 ORTHO05D006558 1.1e-66 258.1 417 42.2
AUR62027127 Chenopodium quinoa HOM05D006199 ORTHO05D006558 1.5e-66 257.7 199 73.4
CSS0017687 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 8.0e-65 251.9 181 67.4
HPP92_008341 Vanilla planifolia HOM05D006199 ORTHO05D006558 1.0e-64 251.5 417 44.1
Os09g0539400 Oryza sativa ssp. japonica HOM05D006199 ORTHO05D006558 4.9e-62 242.7 420 38.8
BcaB07g29803 Brassica carinata HOM05D006199 ORTHO05D006558 7.8e-60 235.3 427 40.3
vmacro02274 Vaccinium macrocarpon HOM05D006199 ORTHO05D006558 1.2e-57 228.0 333 41.7
Psat5g002720 Pisum sativum HOM05D006199 ORTHO05D006558 4.0e-56 223.0 417 39.6
Zm00001eb331950 Zea mays HOM05D006199 ORTHO05D006558 5.0e-51 206.1 307 39.4
unitig_37.g12834 Utricularia gibba HOM05D006199 ORTHO05D006558 4.0e-48 196.4 291 40.5
FAN11G3400 Fragaria x ananassa HOM05D006199 ORTHO05D006558 9.2e-45 185.3 219 48.4
Pp3c15_24300 Physcomitrium patens HOM05D006199 ORTHO05D006558 7.3e-42 175.6 388 34.3
Mapoly0068s0001 Marchantia polymorpha HOM05D006199 ORTHO05D006558 7.6e-39 165.6 405 30.6
FAN12G0591 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.3e-35 154.1 140 55.0
FAN14G5753 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.3e-35 154.1 111 65.8
FvH4_3g06660 Fragaria vesca HOM05D006199 ORTHO05D006558 3.0e-35 153.7 166 50.6
FvH4_1g02330 Fragaria vesca HOM05D006199 ORTHO05D006558 8.7e-35 152.1 111 64.9
AagrBONN_evm.TU.Sc2ySwM_362.2501 Anthoceros agrestis HOM05D006199 ORTHO05D006558 4.3e-34 149.8 393 30.3
FAN06G5031 Fragaria x ananassa HOM05D006199 ORTHO05D006558 2.4e-32 144.1 123 56.1
FvH4_4g14930 Fragaria vesca HOM05D006199 ORTHO05D006558 2.8e-25 120.6 123 49.6
FvH4_5g37420 Fragaria vesca HOM05D006199 ORTHO05D006558 8.1e-25 119.0 120 55.0
RcHm_v2.0_Chr5g0048301 Rosa chinensis HOM05D006199 ORTHO05D006558 3.5e-20 103.6 193 36.3
CSS0031508 Camellia sinensis var. sinensis HOM05D006199 ORTHO05D006558 1.3e-19 101.7 146 44.5
MCO03G518 Micromonas commoda HOM05D006199 ORTHO05D006558 6.7e-19 99.4 153 39.2
SGA_v2.0_scaffold58G20372 Striga asiatica HOM05D006199 ORTHO05D006558 9.6e-18 95.5 163 39.3
BcaB01g02961 Brassica carinata HOM05D006199 ORTHO05D006558 2.1e-17 94.4 206 35.9
FAN24G0607 Fragaria x ananassa HOM05D006199 ORTHO05D006558 3.7e-17 93.6 81 53.1
FAN06G2201 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.2e-15 88.6 140 40.0
FvH4_2g23470 Fragaria vesca HOM05D006199 ORTHO05D006558 1.5e-15 88.2 69 59.4
FAN14G4166 Fragaria x ananassa HOM05D006199 ORTHO05D006558 1.5e-15 88.2 61 65.6
FvH4_7g17270 Fragaria vesca HOM05D006199 ORTHO05D006558 2.2e-14 84.3 80 48.8
Cre07.g351400 Chlamydomonas reinhardtii HOM05D006199 ORTHO05D006558 3.9e-11 73.6 244 28.3
Actinidia20510 Actinidia chinensis HOM05D006199 ORTHO05D006558 1.1e-10 72.0 128 39.1
CDE02G3657 Ceratophyllum demersum HOM05D006199 ORTHO05D006558 2.8e-09 67.4 94 44.7


User provided reference genes

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