Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.6e-34 149.1 86 100.0
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.7e-20 102.4 85 78.8
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 2.4e-14 82.0 82 65.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.0e-13 79.0 80 66.2
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 2.0e-13 79.0 81 64.2
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.7e-13 78.6 81 66.7
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.5e-13 78.2 81 66.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 3.5e-13 78.2 81 66.7
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 3.5e-13 78.2 79 67.1
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 4.5e-13 77.8 80 62.5
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 5.9e-13 77.4 83 63.9
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.0e-12 76.6 80 65.0
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.3e-12 76.3 76 65.8
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.7e-12 75.9 80 63.8
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.3e-12 75.5 75 69.3
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.3e-12 75.5 75 68.0
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.9e-12 75.1 75 66.7
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.0e-12 74.3 85 58.8
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 5.0e-12 74.3 86 47.7
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.6e-12 73.9 80 63.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-11 73.2 79 62.0
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.5e-11 72.8 78 64.1
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.5e-11 72.8 79 63.3
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-11 72.4 78 55.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-11 72.4 78 55.1
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.9e-11 72.4 74 66.2
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.9e-11 72.4 55 61.8
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.5e-11 72.0 79 59.5
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.5e-11 72.0 73 49.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.5e-11 72.0 81 61.7
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.3e-11 71.6 82 61.0
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.3e-11 71.6 78 62.8
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 3.3e-11 71.6 77 64.9
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.2e-11 71.2 79 60.8
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.2e-11 71.2 77 62.3
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 4.2e-11 71.2 78 46.2
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 5.5e-11 70.9 82 47.6
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.2e-11 70.5 80 60.0
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 7.2e-11 70.5 84 58.3
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 9.5e-11 70.1 78 61.5
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-10 69.7 78 62.8
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-10 69.7 79 49.4
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.6e-10 69.3 81 59.3
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.8e-10 68.6 81 55.6
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.8e-10 68.6 81 55.6
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.6e-10 68.2 77 62.3
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.6e-10 68.2 66 51.5
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 4.7e-10 67.8 78 61.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.7e-10 67.8 85 57.6
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 8.0e-10 67.0 78 57.7
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 8.0e-10 67.0 82 39.0
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 8.0e-10 67.0 78 60.3
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.0e-09 66.6 82 56.1
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.4e-09 66.2 77 42.9
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-09 66.2 79 58.2
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.4e-09 66.2 78 56.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.4e-09 66.2 78 50.0
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.4e-09 66.2 81 59.3
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 1.8e-09 65.9 80 57.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.8e-09 65.9 80 58.8
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.8e-09 65.9 75 61.3
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 2.3e-09 65.5 48 68.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.3e-09 65.5 79 40.5
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.3e-09 65.5 80 60.0
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.0e-09 65.1 78 57.7
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 3.0e-09 65.1 81 60.5
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 4.0e-09 64.7 81 45.7
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.0e-09 64.7 79 46.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.2e-09 64.3 75 64.0
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 6.8e-09 63.9 63 49.2
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 6.8e-09 63.9 85 56.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 8.9e-09 63.5 74 40.5
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.5e-08 62.8 80 58.8
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.5e-08 62.8 77 59.7
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-08 62.8 55 56.4
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.5e-08 62.8 81 39.5
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.0e-08 62.4 75 57.3
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-08 62.4 56 55.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 2.0e-08 62.4 77 58.4
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.0e-08 62.4 77 42.9
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.0e-08 62.4 67 53.7
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.0e-08 62.4 77 59.7
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.6e-08 62.0 76 48.7
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.6e-08 62.0 81 44.4
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.6e-08 62.0 66 47.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.6e-08 62.0 67 43.3
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 3.4e-08 61.6 80 37.5
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 3.4e-08 61.6 62 50.0
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 3.4e-08 61.6 63 65.1
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 3.4e-08 61.6 62 50.0
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 3.4e-08 61.6 78 56.4
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.4e-08 61.6 77 54.5
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.4e-08 61.2 81 53.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.4e-08 61.2 46 58.7
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 4.4e-08 61.2 63 65.1
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.4e-08 61.2 81 42.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 4.4e-08 61.2 56 55.4
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-08 61.2 56 55.4
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-08 61.2 56 55.4
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 4.4e-08 61.2 77 41.6
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 5.7e-08 60.8 72 47.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.7e-08 60.8 72 47.2
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.7e-08 60.8 91 41.8
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.7e-08 60.8 78 57.7
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 5.7e-08 60.8 77 58.4
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.5e-08 60.5 79 57.0
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.5e-08 60.5 65 49.2
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 7.5e-08 60.5 101 38.6
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 7.5e-08 60.5 77 53.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 7.5e-08 60.5 80 53.8
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 9.8e-08 60.1 79 54.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.8e-08 60.1 77 54.5
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 9.8e-08 60.1 77 40.3
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 9.8e-08 60.1 56 51.8
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 1.3e-07 59.7 77 45.5
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.3e-07 59.7 76 57.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.3e-07 59.7 75 57.3
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.3e-07 59.7 82 53.7
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.7e-07 59.3 77 58.4
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.7e-07 59.3 80 41.2
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 2.2e-07 58.9 78 57.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 2.8e-07 58.5 50 56.0
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.8e-07 58.5 80 53.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.8e-07 58.5 81 51.9
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 2.8e-07 58.5 71 47.9
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.8e-07 58.5 47 55.3
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 3.7e-07 58.2 77 39.0
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.7e-07 58.2 76 56.6
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 3.7e-07 58.2 52 53.8
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.3e-07 57.4 65 44.6
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 6.3e-07 57.4 77 40.3
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 8.3e-07 57.0 78 56.4
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 8.3e-07 57.0 42 64.3
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 8.3e-07 57.0 58 50.0
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 8.3e-07 57.0 50 52.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-06 56.6 77 54.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.1e-06 56.6 78 52.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.1e-06 56.6 80 53.8
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-06 56.6 52 50.0
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.1e-06 56.6 52 50.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.4e-06 56.2 76 55.3
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.4e-06 56.2 80 36.2
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-06 56.2 66 47.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.4e-06 56.2 103 35.9
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.4e-06 56.2 70 44.3
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-06 56.2 78 56.4
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.4e-06 56.2 76 56.6
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-06 55.8 77 53.2
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.8e-06 55.8 81 49.4
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 2.4e-06 55.5 84 41.7
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 2.4e-06 55.5 68 45.6
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 2.4e-06 55.5 68 45.6
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 2.4e-06 55.5 54 53.7
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 3.1e-06 55.1 73 41.1
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 3.1e-06 55.1 108 38.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.1e-06 54.7 50 50.0
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 5.4e-06 54.3 77 51.9
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 5.4e-06 54.3 65 41.5
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 5.4e-06 54.3 94 38.3
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 7.0e-06 53.9 87 39.1
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 7.0e-06 53.9 87 39.1
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 7.0e-06 53.9 52 51.9
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.0e-06 53.9 75 53.3
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 9.2e-06 53.5 52 51.9
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 9.2e-06 53.5 84 40.5
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 9.2e-06 53.5 84 40.5
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 9.2e-06 53.5 78 52.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.2e-06 53.5 76 55.3


User provided reference genes

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