Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.1e-181 639.8 326 100.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 7.4e-165 583.9 300 99.3
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.1e-160 570.1 317 90.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.7e-148 529.6 317 84.5
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 3.7e-140 501.9 317 79.5
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 6.1e-135 484.6 316 77.2
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.5e-133 479.9 314 76.1
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 4.4e-133 478.4 316 75.6
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 7.5e-133 477.6 316 75.9
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.8e-132 475.7 317 76.7
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.7e-132 475.3 316 75.3
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 3.7e-132 475.3 310 78.1
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.8e-132 474.9 316 75.3
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 6.3e-132 474.6 317 75.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.4e-131 473.4 317 75.7
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.8e-131 473.0 316 75.0
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.1e-131 472.2 310 77.4
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 1.2e-130 470.3 319 75.5
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 1.6e-130 469.9 316 72.5
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 2.0e-130 469.5 314 74.2
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 2.0e-130 469.5 313 73.8
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 7.7e-130 467.6 314 73.9
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 7.7e-130 467.6 314 73.9
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.0e-129 467.2 310 74.8
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.0e-129 467.2 314 74.2
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.3e-129 466.8 313 75.7
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.7e-129 466.5 307 75.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 1.7e-129 466.5 310 73.9
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.7e-129 466.5 318 74.8
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 2.9e-129 465.7 314 73.6
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 3.8e-129 465.3 318 74.8
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 3.8e-129 465.3 316 74.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 3.8e-129 465.3 316 74.4
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.8e-129 465.3 313 76.0
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 6.5e-129 464.5 313 76.0
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.5e-128 463.4 313 74.8
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.5e-128 463.4 316 73.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.5e-128 463.4 316 73.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 1.9e-128 463.0 311 73.6
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.9e-128 463.0 316 73.7
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.9e-128 463.0 315 74.6
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 4.2e-128 461.8 310 75.8
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 7.2e-128 461.1 325 72.0
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 9.4e-128 460.7 314 72.3
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.6e-127 459.9 315 72.4
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.6e-127 458.8 313 72.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.0e-126 457.2 316 72.8
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.4e-126 456.8 317 73.5
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.3e-126 456.1 315 72.1
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.0e-126 455.7 313 71.6
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.0e-126 455.7 317 73.2
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.2e-126 454.9 317 73.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 8.8e-126 454.1 313 71.6
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 8.8e-126 454.1 313 71.6
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 8.8e-126 454.1 313 71.6
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 8.8e-126 454.1 313 71.6
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 8.8e-126 454.1 313 71.9
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.6e-125 452.6 318 71.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.6e-125 452.6 317 73.2
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.4e-125 452.2 341 67.4
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 3.4e-125 452.2 313 71.2
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 5.7e-125 451.4 313 71.6
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 7.5e-125 451.1 313 72.5
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.7e-124 449.9 311 74.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.7e-124 449.9 310 74.8
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 2.8e-124 449.1 316 72.2
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.8e-124 449.1 311 72.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 3.7e-124 448.7 314 72.0
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.4e-123 446.8 320 73.4
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.1e-123 445.7 300 74.3
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 3.1e-123 445.7 317 72.2
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.0e-123 444.5 309 72.8
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 9.1e-123 444.1 337 68.0
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.2e-122 443.7 310 72.3
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.2e-122 443.7 310 73.2
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.2e-122 443.7 294 75.5
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 2.0e-122 443.0 311 71.4
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.7e-122 442.6 315 71.1
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.9e-121 439.1 300 72.3
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.9e-121 439.1 317 70.7
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 5.0e-121 438.3 328 68.6
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.1e-120 437.2 314 69.7
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.5e-120 436.0 307 73.6
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.5e-120 436.0 307 73.3
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 3.2e-120 435.6 311 72.7
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 4.2e-120 435.3 313 69.3
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 7.2e-120 434.5 313 71.9
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 9.5e-120 434.1 317 71.0
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 9.5e-120 434.1 310 71.0
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.8e-119 432.6 300 72.0
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.7e-116 423.3 317 69.7
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 3.7e-116 422.2 313 69.6
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.4e-115 420.2 313 70.6
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.7e-114 416.0 310 66.8
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 3.8e-113 412.1 301 71.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.0e-113 411.8 300 68.7
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.5e-112 410.2 310 71.0
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 1.9e-112 409.8 290 70.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 4.3e-112 408.7 337 65.3
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 3.4e-109 399.1 305 65.9
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.3e-108 397.1 262 71.8
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 4.9e-108 395.2 264 71.6
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 5.4e-107 391.7 343 62.4
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 7.0e-107 391.3 307 65.5
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-106 390.6 287 69.7
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 2.7e-106 389.4 263 72.2
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 4.3e-104 382.1 355 59.2
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 6.2e-103 378.3 310 66.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 8.0e-103 377.9 331 61.9
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 2.6e-101 372.9 294 63.3
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 5.8e-101 371.7 243 73.3
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 3.5e-98 362.5 265 71.7
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.1e-96 357.5 249 72.7
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.1e-96 357.5 218 79.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 9.5e-96 354.4 389 52.2
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 1.6e-95 353.6 218 78.4
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.4e-94 350.5 256 70.3
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 4.0e-94 349.0 251 71.3
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 6.8e-94 348.2 261 69.3
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 2.0e-93 346.7 325 53.5
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.7e-92 343.6 325 53.8
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.7e-92 342.4 298 62.1
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.7e-89 333.6 309 56.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 3.9e-89 332.4 308 55.5
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 8.6e-89 331.3 310 57.1
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 3.3e-88 329.3 235 71.9
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.2e-84 316.6 218 72.5
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 3.0e-81 306.2 196 77.0
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 3.4e-77 292.7 252 61.9
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.2e-75 286.2 227 65.2
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 4.2e-75 285.8 247 55.5
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 2.9e-68 263.1 302 46.4
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.1e-67 261.2 195 64.6
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.0e-65 254.6 154 79.9
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.3e-60 237.7 185 64.3
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 7.6e-53 211.8 158 65.8
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 6.7e-41 172.2 324 38.9
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 8.8e-41 171.8 174 52.3
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-23 114.4 136 50.0
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 2.0e-16 90.9 94 51.1
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.7e-15 87.8 62 71.0
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-12 77.0 37 89.2
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 2.9e-12 77.0 37 89.2
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 2.9e-12 77.0 37 89.2
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 2.9e-12 77.0 37 89.2
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-11 73.9 37 86.5
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 2.5e-11 73.9 37 86.5
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 2.2e-07 60.8 40 72.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 2.8e-07 60.5 46 58.7
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.8e-06 57.8 47 66.0


User provided reference genes

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