Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1424.5 748 100.0
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 0.0e+00 1368.2 734 97.5
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1294.3 791 87.0
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1177.5 777 80.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 0.0e+00 1176.4 759 83.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 801 71.5
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 807 70.9
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 797 71.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1075.1 817 70.7
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 5.1e-312 1074.3 800 70.6
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 1.0e-311 1072.8 796 71.1
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 3.6e-311 1071.2 820 69.1
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 4.6e-311 1070.8 792 71.0
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 1.3e-310 1069.3 847 67.9
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.7e-310 1068.9 796 70.9
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 5.1e-310 1067.4 791 71.2
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 7.3e-309 1063.5 792 71.1
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 1.6e-308 1062.4 797 70.8
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 2.8e-308 1061.6 808 70.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 4.7e-308 1060.8 800 70.8
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 4.7e-308 1060.8 808 70.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 3.1e-307 1058.1 800 70.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 6.8e-307 1057.0 801 70.4
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 1.2e-306 1056.2 809 69.7
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 4.4e-306 1054.3 808 68.6
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.7e-305 1051.2 799 69.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.7e-305 1051.2 808 70.2
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 1.6e-303 1045.8 800 69.2
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 2.3e-302 1042.0 801 68.3
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 5.1e-302 1040.8 794 70.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 1.1e-301 1039.6 779 70.6
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 3.3e-301 1038.1 795 68.9
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 4.3e-301 1037.7 779 69.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 4.3e-301 1037.7 780 69.6
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.6e-300 1035.8 829 67.7
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 2.8e-300 1035.0 796 69.5
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 3.6e-300 1034.6 796 69.3
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 4.7e-300 1034.2 869 65.0
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 8.1e-300 1033.5 784 70.0
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 3.1e-299 1031.6 798 69.7
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 8.9e-299 1030.0 798 69.5
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 8.9e-299 1030.0 752 72.6
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.5e-298 1029.2 779 70.2
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 2.6e-298 1028.5 794 69.0
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 3.4e-298 1028.1 798 68.7
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 9.9e-298 1026.5 798 68.4
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 1.3e-297 1026.2 798 68.4
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.2e-297 1025.4 794 68.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 3.8e-297 1024.6 798 68.0
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.8e-297 1024.6 785 69.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.4e-296 1022.7 790 68.6
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 1.9e-296 1022.3 770 69.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 2.4e-296 1021.9 805 68.1
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 4.2e-296 1021.1 779 69.6
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 9.3e-296 1020.0 789 68.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 2.7e-295 1018.5 804 68.0
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.7e-295 1018.5 778 68.1
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 2.7e-295 1018.5 804 67.0
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 3.5e-295 1018.1 787 69.4
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 6.0e-295 1017.3 784 68.5
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 7.8e-295 1016.9 793 68.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 3.0e-294 1015.0 796 68.0
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 7.3e-293 1010.4 802 67.0
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 2.1e-292 1008.8 804 66.5
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 1.4e-291 1006.1 753 69.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.8e-291 1005.7 809 66.5
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 5.3e-291 1004.2 793 68.1
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 4.4e-290 1001.1 785 67.8
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 7.6e-290 1000.3 788 68.1
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 9.9e-290 1000.0 790 67.2
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 6.4e-289 997.3 845 64.5
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 6.4e-289 997.3 810 66.3
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 1.4e-288 996.1 801 66.5
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.4e-288 995.3 783 68.1
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.4e-288 995.3 783 68.1
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 2.7e-287 991.9 780 68.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 4.6e-287 991.1 780 68.1
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 4.6e-287 991.1 780 68.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 4.6e-287 991.1 783 67.6
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-287 990.3 785 67.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.3e-286 989.6 782 66.5
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.0e-286 988.4 796 66.5
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.3e-285 984.6 796 66.0
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 9.6e-285 983.4 800 66.1
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 9.6e-285 983.4 802 65.5
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 1.6e-284 982.6 810 65.7
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 2.1e-284 982.2 809 65.6
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 1.8e-283 979.2 777 66.5
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 3.8e-281 971.5 646 76.6
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 3.9e-278 961.4 764 67.9
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.5e-277 959.5 646 76.5
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 2.1e-276 955.7 894 60.3
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 1.8e-275 952.6 646 76.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 1.5e-274 949.5 802 63.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 1.8e-270 936.0 792 63.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 5.1e-270 934.5 796 64.8
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 8.2e-268 927.2 806 62.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 1.0e-265 920.2 756 66.1
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 1.7e-265 919.5 757 66.1
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 2.9e-265 918.7 796 63.3
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 6.5e-265 917.5 777 63.3
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 2.5e-261 905.6 754 65.6
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.7e-257 892.9 810 59.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 5.0e-257 891.3 759 64.3
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-246 857.1 755 63.0
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.8e-246 856.3 777 61.5
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.2e-242 843.6 781 58.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 3.3e-237 825.5 807 57.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.7e-236 822.0 713 64.7
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 3.8e-233 812.0 815 55.7
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 2.1e-231 806.2 642 68.8
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 3.7e-228 795.4 797 56.8
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 2.3e-217 759.6 637 65.0
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 7.5e-197 691.4 480 75.4
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 3.9e-193 679.1 805 48.4
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.9e-180 636.3 850 44.8
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.9e-180 636.3 850 44.8
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.4e-171 607.4 872 42.1
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.6e-170 604.0 616 55.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-168 597.8 652 51.5
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.3e-168 596.3 840 43.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 2.1e-162 577.0 532 60.2
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 3.9e-161 572.8 460 64.8
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.0e-153 548.1 842 41.7
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 1.3e-153 547.7 434 65.9
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 3.7e-151 539.7 579 53.7
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 8.5e-124 448.7 403 61.0
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-101 373.6 618 42.2
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 3.6e-98 363.6 553 43.6
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 2.2e-79 301.2 212 75.0
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.6e-74 283.9 766 31.3
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 4.1e-70 270.4 660 35.0
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 5.4e-70 270.0 207 67.6
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-67 261.9 197 68.5
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 2.5e-67 261.2 197 68.5
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 2.5e-67 261.2 197 68.5
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.4e-65 254.6 208 64.4
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.4e-56 224.2 237 54.4
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 7.9e-53 213.0 314 46.2
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 1.2e-48 199.1 131 78.6
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.4e-46 192.2 557 32.3
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.5e-46 190.3 121 71.9
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.2e-42 176.4 92 87.0
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 2.9e-39 167.9 766 26.8
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.9e-39 167.9 271 44.3
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-36 159.5 87 78.2
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.0e-36 159.5 87 78.2
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.8e-33 148.7 360 32.2
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.9e-30 138.7 130 56.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 2.2e-26 125.2 142 49.3
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 3.4e-24 117.9 89 59.6
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.3e-20 105.1 71 67.6
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-19 102.8 74 63.5
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.0e-19 102.1 107 53.3
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.7e-18 97.8 113 42.5
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 6.3e-18 97.1 75 72.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.0e-15 87.4 84 52.4
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 7.2e-14 83.6 59 62.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.2e-14 83.6 146 40.4
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.5e-11 75.9 55 70.9
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.0e-11 75.5 123 42.3
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.3e-10 72.8 56 71.4
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 3.7e-10 71.2 77 51.9
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 9.1e-09 66.6 54 66.7
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 1.2e-08 66.2 50 74.0
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 4.5e-08 64.3 79 50.6
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 4.5e-08 64.3 51 68.6
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.7e-07 62.4 52 59.6
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.7e-07 62.4 247 29.6
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 2.9e-07 61.6 48 66.7


User provided reference genes

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