Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.9e-157 559.7 339 100.0
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.5e-138 496.1 428 72.7
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.3e-137 493.8 428 72.4
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 7.4e-122 441.4 404 71.5
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 1.5e-117 427.2 408 70.3
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 9.4e-117 424.5 407 69.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.6e-116 423.7 404 68.8
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 2.1e-116 423.3 314 74.8
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.8e-115 420.2 407 65.4
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.2e-114 417.5 298 78.2
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.4e-112 410.6 407 67.3
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.4e-112 410.6 407 67.3
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.4e-112 409.8 407 67.3
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.1e-112 409.5 403 67.7
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.2e-111 407.5 298 86.2
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 1.6e-111 407.1 401 62.8
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 3.5e-111 406.0 295 81.7
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 3.8e-110 402.5 299 80.9
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.8e-110 402.5 299 80.9
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.8e-110 402.5 299 80.9
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 8.5e-110 401.4 299 80.6
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.5e-109 400.6 294 84.7
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.9e-109 400.2 299 74.6
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 4.2e-109 399.1 382 71.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.1e-108 396.7 298 79.5
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 3.6e-108 396.0 400 69.0
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.0e-107 394.4 314 75.5
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 5.7e-106 388.7 310 74.8
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 7.5e-106 388.3 295 79.3
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.7e-105 387.1 377 70.6
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.2e-105 386.7 408 65.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 1.1e-104 384.4 406 61.3
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.4e-104 382.1 407 66.3
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 7.0e-104 381.7 377 70.0
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 9.1e-104 381.3 408 65.9
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.0e-103 380.2 377 69.8
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 7.7e-103 378.3 408 62.5
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 7.7e-103 378.3 405 64.9
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 7.7e-103 378.3 298 82.9
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 7.7e-103 378.3 407 65.4
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.7e-102 377.1 314 78.7
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.7e-102 377.1 314 78.7
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.7e-102 377.1 295 83.4
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 2.5e-101 373.2 295 72.2
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 2.5e-101 373.2 407 65.1
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.3e-101 372.9 400 66.2
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 3.3e-101 372.9 407 64.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 9.5e-101 371.3 315 77.5
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.2e-100 370.9 407 64.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 1.2e-100 370.9 298 81.5
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 1.6e-100 370.5 296 82.1
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.6e-100 370.5 298 82.2
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.6e-100 370.5 298 82.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 2.1e-100 370.2 314 77.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.1e-100 370.2 407 64.9
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.8e-100 369.8 407 64.1
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 3.6e-100 369.4 298 81.9
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 8.0e-100 368.2 370 68.9
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.0e-99 366.3 295 81.7
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 6.8e-99 365.2 294 78.6
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 6.8e-99 365.2 298 80.2
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 8.9e-99 364.8 298 81.2
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 8.9e-99 364.8 298 80.2
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.5e-98 364.0 314 77.4
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 3.4e-98 362.8 298 80.5
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 4.4e-98 362.5 377 57.6
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 4.4e-98 362.5 408 63.0
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 4.4e-98 362.5 298 80.5
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.7e-98 362.1 407 64.1
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 9.8e-98 361.3 412 54.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 9.8e-98 361.3 298 80.2
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 9.8e-98 361.3 298 79.5
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 1.7e-97 360.5 304 61.2
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.9e-97 359.8 407 59.5
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 6.3e-97 358.6 405 63.7
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 6.3e-97 358.6 411 63.0
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 8.3e-97 358.2 314 76.8
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.1e-96 357.8 329 70.2
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.1e-96 357.8 314 76.1
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 3.2e-96 356.3 314 71.0
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 4.1e-96 355.9 307 77.9
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 7.0e-96 355.1 407 63.4
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 7.0e-96 355.1 407 62.7
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.2e-95 354.4 403 61.0
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 7.8e-95 351.7 299 68.9
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.0e-94 351.3 429 58.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.7e-94 350.5 408 63.5
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 2.3e-94 350.1 294 79.3
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.5e-93 347.4 331 65.9
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 2.8e-92 343.2 298 79.2
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.0e-91 341.3 294 76.5
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.8e-91 340.5 294 76.5
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-91 340.1 299 67.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 3.1e-91 339.7 298 73.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 3.1e-91 339.7 299 67.2
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 6.8e-91 338.6 309 65.7
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.4e-90 335.9 311 63.7
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 5.8e-90 335.5 294 77.9
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.8e-90 335.5 305 67.5
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 7.5e-90 335.1 314 71.0
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 9.8e-90 334.7 397 61.0
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.7e-89 334.0 296 73.6
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.7e-89 332.8 397 59.4
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 8.3e-89 331.6 296 72.6
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-88 330.5 393 59.5
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 2.4e-88 330.1 407 59.0
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 4.1e-88 329.3 295 73.6
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 7.0e-88 328.6 404 58.2
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 7.0e-88 328.6 404 58.2
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 7.0e-88 328.6 404 58.2
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 7.0e-88 328.6 404 58.2
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 7.0e-88 328.6 404 58.2
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 7.0e-88 328.6 310 73.5
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 6.6e-86 322.0 296 59.8
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.9e-85 320.5 197 75.6
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.5e-85 320.1 304 63.2
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.5e-85 320.1 304 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 2.1e-84 317.0 314 68.5
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 2.8e-84 316.6 310 60.3
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 6.2e-84 315.5 304 62.8
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 8.9e-83 311.6 363 62.5
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.2e-82 311.2 310 69.0
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.9e-80 303.9 328 56.7
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 2.4e-80 303.5 402 47.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 3.2e-80 303.1 528 46.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 2.3e-78 297.0 314 59.9
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 3.3e-77 293.1 350 63.1
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.2e-76 291.2 193 72.5
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 6.8e-75 285.4 294 66.3
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 4.4e-74 282.7 383 50.1
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 1.2e-71 274.6 304 54.9
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.7e-70 270.8 307 55.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.9e-69 267.3 283 61.8
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 2.1e-68 263.8 379 43.3
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.0e-66 257.3 285 67.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.4e-66 256.5 122 98.4
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-64 251.1 372 41.1
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 2.1e-63 247.3 312 50.3
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 8.7e-62 241.9 122 91.0
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 4.3e-61 239.6 339 49.6
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 9.0e-59 231.9 180 65.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 6.2e-52 209.1 310 41.6
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 2.1e-47 194.1 298 40.6
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 4.6e-47 193.0 210 70.5
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 6.0e-47 192.6 292 53.4
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 2.3e-46 190.7 223 56.1
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 5.1e-46 189.5 223 56.1
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 9.6e-45 185.3 123 68.3
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.5e-40 170.6 87 87.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.6e-39 167.9 182 53.3
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.1e-36 157.5 303 39.3
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 3.4e-34 150.2 156 64.7
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 5.5e-32 142.9 104 67.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 7.2e-32 142.5 95 71.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 3.9e-30 136.7 184 43.5
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.2e-25 120.9 83 69.9
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.2e-25 120.9 80 71.2
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-23 115.2 298 36.6
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.6e-23 114.8 122 50.0
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.1e-21 108.6 57 80.7
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 5.3e-19 99.8 50 80.0
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 3.8e-17 93.6 116 48.3
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.4e-16 91.7 62 67.7
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 5.5e-16 89.7 121 61.2
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.2e-15 88.6 43 90.7
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 7.9e-15 85.9 42 90.5
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.0e-14 84.0 42 88.1
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.1e-13 82.0 140 36.4
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.5e-13 81.6 43 81.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.3e-13 80.5 41 87.8
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 3.3e-13 80.5 41 87.8
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 8.2e-12 75.9 149 30.9
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 9.1e-11 72.4 38 78.9
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 4.5e-10 70.1 52 55.8
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 3.8e-09 67.0 40 72.5
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 6.1e-07 59.7 192 25.0
Cre17.g723450 Chlamydomonas reinhardtii HOM05D010245 ORTHO05D017828 4.0e-06 57.0 324 24.7


User provided reference genes

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